Magnolia sinica: 131239808
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Entry
131239808 CDS
T09699
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
msin
Magnolia sinica
Pathway
msin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131239808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msin03041
]
131239808
03009 Ribosome biogenesis [BR:
msin03009
]
131239808
Enzymes [BR:
msin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131239808
Spliceosome [BR:
msin03041
]
Complex A
U1 snRNP components
U1 related factors
131239808
Complex B
131239808
Ribosome biogenesis [BR:
msin03009
]
Eukaryotic type
Pre-60S particles
Helicases
131239808
BRITE hierarchy
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
131239808
NCBI-ProteinID:
XP_058093667
LinkDB
All DBs
Position
3:complement(34819576..34852591)
Genome browser
AA seq
673 aa
AA seq
DB search
MMNNHFDVRYADPNSYRDRRSDLMGPPAPMPSLGGYGAGVPNTGPAFGGPPAPFVAGRGV
GPPGPGPIGGGGAPPHFSSGPPGRGMDPGRGSGGRGFNAGRGGGDRGGRMSNGGRAGRRG
GFEGGRGGRGYSGGRGGGGGGGGRGFEGGRGGGRGRDSGRGGGRGFGGGRGGGGRGFDKG
RGGGGRGGGDGRRGKGELDGIALPREDFSNLIPFEKSFYVESPSVQMMSEQDVILYRQGR
DIMVEGQDIPKPIRFFHEANFPDYCLQAIEKCGFVEPTPIQAQGWPMALKGRDLIGIAET
GSGKTLAYLLPALVHINAQPRLEQGEGPIGLVLAPTRELAVQIQEEAAKFGSHSNVRSTC
IYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEARHTNLRRVTYLVLDEADRMLDMGFEP
QIRKIMLQIRPDRQTLYWSATWPREVETLARQFLQNPYKVIIGSPDLKANQSIIQIVEVV
QEHEKYPRLIKLLGELMDGSRMLVFLETKKGCDQVTRQLRMDGWPALSIHGDKNQAERDW
VLAEFKSGRSPIMTATDVAARGLDVKDIKCVINYDFPASLEDYVHRIGRTGRAGAKGTAF
TFFTHANARFAKDLIKILQGAGQSVSPTLSTLSRSGGGGTGGNFRSRGRGFGNRSSISGS
NTTPLGGAKRQQW
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgatgaacaaccatttcgatgtcagatacgccgatcccaattcctaccgagaccgcaga
agtgatctaatggggccgccagcgccgatgccttccttaggcggctacggagctggtgtt
cctaacactggccctgcttttggagggcctcctgcaccgtttgtcgccggtagaggcgtc
ggcccacctggacctggccccattgggggcggtggcgctccgccacatttctcgtcaggc
ccccctggcaggggaatggacccaggccgcggcagcggtggaaggggtttcaatgccggg
agaggcggcggcgatcgcggaggaagaatgtcgaatggtggacgtgctggccggagaggc
gggtttgaagggggtcgtggcgggaggggttattcgggtgggcgcggcggcggtggcggt
ggcgggggtagagggtttgaaggtggacgcgggggtggcagaggccgtgactcgggtcgg
ggtggtgggagaggctttggtgggggccggggcgggggtggtaggggttttgataagggg
cgtggtggcggcggcagaggcggtggtgatggtcggcggggaaaaggagagttggatggc
attgctctcccgagggaggattttagcaatctgatcccttttgagaagagcttctatgtg
gagagcccttctgtgcagatgatgtcagaacaggatgttatcctttatcgccaggggcgt
gatattatggtcgaagggcaagatattccaaagccgattcggttttttcacgaggcaaac
tttccagattactgcctccaggcgatagagaaatgtggctttgtggagccaactcctatt
caagctcaaggatggccaatggctttaaagggtagagatttgattggcattgctgaaacc
ggttctggaaaaacattggcatatctgcttccagcgttggttcatataaatgcacagcca
cgcctggaacaaggtgaaggtcccattggcctcgtcttagcacctaccagggaactggct
gttcagattcaagaagaagctgcaaagtttggatctcattcaaatgtcagaagtacctgc
atctatgggggtgcccctaagggaccacagattcgtgatcttcaaagaggggttgaaatt
gtcattgcaacacctggtcgactaattgatatgctggaagctcgtcatacaaacctgcgg
agagtaacataccttgtattggatgaggcagatcgtatgctggatatgggctttgagcct
cagattaggaaaatcatgttacaaattcggcctgaccggcagacgttatattggagtgcc
acatggccaagagaggtggagactttggcaaggcagttcttacaaaatccatacaaggtg
atcattggatccccggatttgaaagccaatcagtctataatccaaattgttgaagttgtg
caagagcatgaaaagtaccccaggctgatcaaactgctgggagaactgatggatgggagc
cggatgcttgtattcctagagacaaagaaaggatgtgaccaggttacccggcaattgagg
atggatggatggccggctctatccatccatggtgataaaaaccaagccgagagggactgg
gttctggctgaatttaaaagtggcagaagtcctataatgactgccactgatgtagctgca
cgtggtcttgatgttaaagatataaaatgcgtgataaattatgacttcccagcgagcctc
gaggactacgttcataggattggaagaaccggacgtgctggtgctaagggaactgccttc
acctttttcactcatgcaaatgcaaggtttgccaaggatctcattaagatcctacaagga
gcaggacagtctgtgagtccgacattgtccaccttgagccggtcagggggaggaggtact
ggtgggaatttccgttcaaggggacggggttttggcaaccggtcttcgatttctggttct
aatactacccctctcggcggggctaagaggcagcagtggtag
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