Magnolia sinica: 131242955
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Entry
131242955 CDS
T09699
Name
(RefSeq) eukaryotic initiation factor 4A-3-like
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
msin
Magnolia sinica
Pathway
msin03013
Nucleocytoplasmic transport
msin03015
mRNA surveillance pathway
msin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131242955
09122 Translation
03013 Nucleocytoplasmic transport
131242955
03015 mRNA surveillance pathway
131242955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msin03019
]
131242955
03041 Spliceosome [BR:
msin03041
]
131242955
03009 Ribosome biogenesis [BR:
msin03009
]
131242955
03012 Translation factors [BR:
msin03012
]
131242955
Enzymes [BR:
msin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131242955
Messenger RNA biogenesis [BR:
msin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
131242955
mRNA cycle factors
Stress granule specific factors
131242955
Spliceosome [BR:
msin03041
]
Complex C
Other components
EJC/TREX
131242955
Ribosome biogenesis [BR:
msin03009
]
Eukaryotic type
90S particles
Helicases
131242955
Translation factors [BR:
msin03012
]
Eukaryotic type
Initiation factors
eIF-4
131242955
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-GeneID:
131242955
NCBI-ProteinID:
XP_058097936
LinkDB
All DBs
Position
4:31136285..31148051
Genome browser
AA seq
414 aa
AA seq
DB search
MAAATASASVVPRNRNGPGRSGAADDDNLVFETSPGVEVVSSFDQMGIRDDLLRGIYAYG
FEKPSAIQQRAVMPIINGRDVIAQAQSGTGKTSMIALTVCQMVDTATREVQALIVSPTRE
LASQTEKVILAIGDYINIQAYACIGGKSIGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLR
TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVILISATLPHEILEMTNKFMTDPV
RILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKM
RSCNFTVSSMHGDMPQKERDAIMAEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNN
RELYIHRIGRSGRFGRKGVAINFVRSDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgcaactgcctcagcgtcggtggtcccgcggaaccggaacggaccgggtcgt
agcggcgcggcggacgatgacaacttggtgttcgagacgagccctggggttgaggttgtc
agcagcttcgaccagatggggatccgagacgatctcctccgcggcatctacgcctacgga
ttcgagaaaccttctgcgattcagcagcgggccgtgatgcccatcatcaacggcagggat
gtcatcgcccaggcccagtctgggaccggcaagacttccatgatcgccctcactgtctgc
cagatggtcgatactgctacccgagaggtgcaggcattaattgtgtctcccacaagagaa
ctcgcctcacaaactgagaaagtaattttggctattggcgactacataaatatacaagcc
tacgcatgcattggaggcaagagtataggagaggatataaggaagctggaatatggagtt
catgtggtgtctggaacgcccggcagagtctgtgacatgatcaagagaagaactttacgt
accagagctatcaaactactagtcctcgatgaatctgatgagatgttgagccgaggattc
aaggatcagatatatgatgtttacagatatcttccacctgagcttcaggtcatattgata
tctgcaaccttgcctcatgaaattttggagatgacaaacaagtttatgacagatcctgtt
aggatacttgttaagcgtgatgaattgaccttggaaggcatcaaacagttctttgttgct
gtcgaaagagaagagtggaaattcgatactctctgtgatctctatgatacccttacaatc
acacaagccgttattttctgcaacacaaagagaaaggtggactggttgactgaaaaaatg
cgtagctgtaactttacagtctcgtcaatgcatggtgacatgcctcagaaggagcgagat
gcaataatggcagagttccgttcgggaacaacccgtgtcctcataacaacagatgtgtgg
gcacgggggcttgatgttcagcaggtttcgttggtgatcaattatgaccttccaaacaac
cgagagctttacatccaccgtataggtcgctctggccgttttgggcgcaagggtgtggct
attaactttgtgcggagtgatgacattaggattctaagggacatagagcagtattacagc
actcaaattgatgagatgcctatgaacgtggctgacctgatatga
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