KEGG   Magnolia sinica: 131243026
Entry
131243026         CDS       T09699                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit 4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
msin  Magnolia sinica
Pathway
msin03020  RNA polymerase
msin03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:msin00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    131243026
  09124 Replication and repair
   03420 Nucleotide excision repair
    131243026
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:msin03021]
    131243026
   03400 DNA repair and recombination proteins [BR:msin03400]
    131243026
Transcription machinery [BR:msin03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     131243026
DNA repair and recombination proteins [BR:msin03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      131243026
SSDB
Motif
Pfam: RNA_pol_Rpb4 Glycos_transf_1
Other DBs
NCBI-GeneID: 131243026
NCBI-ProteinID: XP_058098066
LinkDB
Position
4:36667457..36687316
AA seq 138 aa
MSGEEEENAAELKIGEEFLKAKCLMNCEVALILDRKYEQLQQMSDDPMNQISQVFEKSLQ
YVKRFSRYKNPDAVRQVREILSRNQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRIHD
DDAIEKMLHDLSLIKKFE
NT seq 417 nt   +upstreamnt  +downstreamnt
atgtctggagaagaggaagagaacgctgcagagctaaagattggagaagagtttttgaag
gcgaagtgtctgatgaattgtgaagttgcactaattctcgatcgaaaatatgagcagctt
caacagatgtctgatgatcctatgaatcaaatttctcaagtttttgagaagtcattgcag
tatgtaaagcgctttagtcgctacaaaaatccagatgctgtgaggcaggttcgagaaatc
ttgagccgaaaccagctagctgaatttgagctttgtgttcttggcaacctttgccctgaa
actgtagaagaggccatagctatggtcccatctcttaagaccaaaggacgaattcatgat
gacgacgccattgagaaaatgctacatgacctctctctgatcaagaaatttgagtag

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