Magnolia sinica: 131243936
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Entry
131243936 CDS
T09699
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
msin
Magnolia sinica
Pathway
msin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131243936
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msin03019
]
131243936
Enzymes [BR:
msin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131243936
Messenger RNA biogenesis [BR:
msin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
131243936
mRNA degradation factors
3'-5' decay
Ski complex
131243936
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
Ski2_N
ResIII
DUF792
AAA_22
DUF3516
Motif
Other DBs
NCBI-GeneID:
131243936
NCBI-ProteinID:
XP_058099553
LinkDB
All DBs
Position
4:complement(113786209..113856327)
Genome browser
AA seq
1347 aa
AA seq
DB search
MERIVAANEVAFRVGFSGYSGHLRLEPLPPVERPNPLSSLPDFILPSAFEPATPDTVKKD
LEQNYLVPELDPDEFSPENSGRQWDFDWFDRAKVELEPSLPRSVVVPSWELPFRRSKDGT
SQGKWKPISVQVEVTELMEGAQVSGTLPRMPGPSKDFVSGSINKRPFRPGGLDNSQSSER
TVPEGARNGDWVRELLDGGPAQTILPSLKQGVDFGCLKAHPYSWKCVDEQSSVDTGENLS
TLSVQFDDLFKKAWEEGVDEGPASDGSSSEADSVKLEPEVKEEENVADTVQDTGFAPLDE
ILLEEPEGSTAQLDGVGDRSGTQHKEAWAVAGSSEGIANHFYELVPDMALDFPFELDKFQ
KEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFCG
KFDVGLLTGDVSLRPEASCLIMTTEILRSMLYKGADIIRDIEWVIFDEVHYVNDAERGVV
WEEVIIMLPRHVNIVLLSATVPNTIEFADWIGRTKQKKIRVTGTTKRPVPLEHYLFFSGE
LYKVCEHEVFEPQGVRAAKGAFKKKNSSPAGGGPGISMVSAVPQSGAQARQRENHNRGKV
QKHSGPQAAGNFSWAGGAHQNNWGSRRSEASLWLLLVNKLSKLSLLPVVIFCFSKNRCDK
SADNLPGTDLTTSSEKSEIRIFCDKAFSRLKGSDRNLPQVVRVQNLLRRGIGVHHAGLLP
IVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKEFRQLLPGEYTQMA
GRAGRRGLDKIGTVIVLCRDEIPEESDLSRVMVGSPTRLESQFRLTYTMILHLLRVEELK
VEDMLKRSFAEFHAQKKLPEQQQLLMRKLAQATKTIECIKGEPAIEEYYEMAIKAEECGD
HVLEKIMQSSIARKNLLPGRVVVVKSHAVQDHLLGVVLKTPSNDIKQYIVLVLKPDLPPS
AQPASAALGKPDDKESGNFPQGYFIAPKGKRGTDEYFSAAGSRKGSGIINIKLPYCGKAA
GVNYEVIGMDDKEFLSICKVKIKIDQVGLLEEPSNATYSRTVQQLLDEKADGKRYPPVLD
PLNDLKLKDMHLVEEYNRWNSLLQEMSQNKCHGCVKLQEHILLQKELKGHRAEVDALRYQ
MSDEALQQMPDFQGRIDVLKEIGCIDADLVVQIKGRVACEMNSGEELICTECLFENQLDD
LEPAEAVALMSALVFQQKNTSEPSLTPKLALAKQRLHETAVRLAKLQAHFKVAVNPEDYV
QDNLKFGLVEVVYEWAKGTPFANICELTDVQEGQIVRTIVRLDETCREFKTAAAIMGNSA
LYKKMETASNAIKRDIVFAASLYVTGV
NT seq
4044 nt
NT seq
+upstream
nt +downstream
nt
atggagcggatcgtcgcggcgaatgaagtcgctttcagggtcgggttctccggctatagt
ggccacctccggctcgagcctctcccacccgtcgaacgcccgaaccctctcagttctctc
cccgatttcattctcccatcggcttttgagccggcaacacctgatactgtgaagaaggat
ttggagcagaattatctcgtgccggaattggatcctgatgaattctctccagaaaattct
ggtagacaatgggatttcgattggtttgatagggcaaaagtagaattggagccatcgttg
ccacggtccgtagttgtcccctcatgggaattaccattcaggcgctcgaaggatggaact
tctcaagggaaatggaaacccatctcagtacaggtagaggtgacagagctaatggaagga
gctcaagtttctggaaccttgccacgcatgcctggaccttcaaaggattttgtaagtggc
agcatcaacaagcgtcctttccgtcctggaggcctagacaattctcaatcttcggaaagg
actgttcccgagggtgctcgcaatggtgattgggttcgtgaacttcttgatggtggccct
gcacagactattcttccaagtttaaagcaaggagtggattttggttgtctcaaggcacat
ccgtactcgtggaaatgtgttgatgaacaaagttcggttgacacgggtgaaaatctgagt
acgttgtctgtacagtttgatgatttattcaagaaagcttgggaagaaggtgttgatgaa
ggaccagctagtgatggttcttcttcagaagcagactctgttaagctggaaccagaagtc
aaagaggaagagaatgtagctgatactgttcaggatactgggttcgcgccattagatgag
atactgttggaggaaccagaaggctcaactgcacaattagatggtgttggtgaccgcagt
gggacacagcacaaagaggcttgggctgtggctggaagcagcgaagggattgcaaatcat
ttttatgaacttgtacctgacatggcacttgattttccattcgaactggataagttccaa
aaggaggctatttattatcttgaaaaaggtgaatctgttttcgtggccgctcatacatca
gctggcaaaactgttgttgcagaatatgcgtttgcattggcatcaaaacattgtactcgg
gccgtctatactgctcccataaaaaccatcagcaaccagaagtacagagatttctgtggc
aagttcgatgttggccttcttactggggatgtaagcttgaggcctgaggcatcctgcctt
atcatgaccactgaaatattaaggtcaatgctatataaaggtgctgacattatacgggac
attgaatgggttatttttgatgaggtgcactatgtaaatgatgctgaaagaggtgttgtt
tgggaagaagttattatcatgcttccaaggcatgttaatattgtcctcctgtcagcaacg
gtgccaaacacaatagaatttgctgactggattggccggacaaagcaaaagaaaatccgt
gttacgggcaccactaaaagaccggttcctttggagcactacctattcttctctggagaa
ctgtataaagtatgtgaacatgaagtttttgagccccagggtgtaagagctgcaaaaggc
gctttcaagaaaaaaaattcaagtccagctggaggtggtcctggaatatccatggtgtct
gcagtaccccaaagtggggctcaagctcgacaacgtgaaaatcacaatcgtggaaaagtg
caaaagcattctggacctcaagctgcgggaaatttttcatgggctggtggcgctcatcaa
aacaactgggggtcaagaagatcagaggcttctttgtggctattgcttgtgaataagctc
tcaaagctgtcccttttacctgtggttattttctgcttttcaaagaatcgttgtgataag
tcagcagataatttgcctgggactgacctcacaaccagttctgagaagagtgaaattcgc
attttctgtgacaaggcattttcacggctgaagggatctgatagaaatcttccacaggtt
gtcagagtccaaaacctactgcgtagggggatcggtgtacaccatgctgggcttcttcca
attgttaaggaagttgttgagatgctgttctgtcgtggtgtgattaaggtattgttttcg
acggaaacatttgctatgggagttaatgccccagctaggacagttgtctttgatactttg
agaaagtttgatggcaaggaattcagacaattacttccaggagaatacactcaaatggcg
ggtcgtgctggcaggagaggattggacaagattggtactgtcattgtattatgccgtgat
gaaatccctgaagagagcgatttgagccgtgtcatggtgggaagtccaaccaggcttgaa
tcacaatttcgtctcacctacaccatgattctacacctactccgtgtcgaagagttgaag
gtggaggacatgttgaagagaagttttgctgaattccatgctcagaaaaaacttccagag
caacaacaacttctcatgcgaaagctcgctcaagctaccaaaactattgagtgcatcaaa
ggtgaacctgcaattgaagaatactatgagatggccataaaagcagaagagtgtggagat
catgtactagagaagatcatgcagtccagtattgctcggaaaaatctattacctggaaga
gtggtggttgtcaaatcacatgcagtgcaagatcatttacttggagtcgtcctgaaaaca
cctagcaacgatattaagcaatatattgttttggtactgaaacccgatttgcctccatct
gcgcaacctgcttcagctgcacttggcaaaccagacgacaaagaaagcggcaatttccca
caaggttacttcattgctcccaaaggaaaacgtggcacggatgaatacttctccgccgct
ggttctcgcaagggatctggtatcatcaatataaaattgccatactgtggcaaggcagct
ggtgtgaattacgaggttatagggatggatgataaagagttcttaagtatttgcaaagtc
aagataaagattgatcaagttgggcttcttgaggaacccagtaatgctacatactcaagg
actgttcagcagctgttggatgagaaagccgatggaaaaagataccctcctgtcctagat
ccgttgaatgatcttaagctgaaagatatgcatctcgttgaggagtacaatagatggaat
agcctattgcaagagatgtctcagaacaagtgtcatggatgcgtaaaattgcaggagcac
attttattgcaaaaagagctaaaaggacacagagctgaagttgatgcactgagatatcaa
atgtctgatgaagcactgcagcagatgccagactttcagggccgaattgatgtgctgaag
gagatcggctgtattgatgccgatcttgttgttcagatcaagggtcgcgtggcctgtgag
atgaattccggggaggagctgatatgcactgaatgcctgtttgagaaccagttggatgac
ctggaaccagcagaagctgttgccctcatgtccgctctcgtatttcagcagaagaacaca
tctgaaccgtctcttactccgaagctggctctggcaaagcagagattgcatgaaacagca
gtcaggcttgcaaaacttcaagcccacttcaaagtagcagtaaatcccgaagattacgtg
caagacaatctcaagtttggcctcgtcgaagttgtctacgaatgggcaaagggcacgcct
tttgccaatatttgcgagcttacagatgtacaagaaggtcagatagtgaggacgatagtc
cgtttggatgaaacgtgccgggaattcaagactgctgcggcgatcatgggtaactctgca
ctctataagaaaatggaaactgcttctaatgcaatcaaacgcgatattgttttcgctgcc
agtttgtatgttaccggcgtctga
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