Magnolia sinica: 131245245
Help
Entry
131245245 CDS
T09699
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
msin
Magnolia sinica
Pathway
msin03020
RNA polymerase
msin03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
131245245
09124 Replication and repair
03420 Nucleotide excision repair
131245245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msin03021
]
131245245
03400 DNA repair and recombination proteins [BR:
msin03400
]
131245245
Enzymes [BR:
msin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
131245245
Transcription machinery [BR:
msin03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
131245245
DNA repair and recombination proteins [BR:
msin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
131245245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
131245245
NCBI-ProteinID:
XP_058100549
LinkDB
All DBs
Position
5:complement(5720369..5736336)
Genome browser
AA seq
1190 aa
AA seq
DB search
MYEGEEYDPPDEEEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA
DIEIRPESQHNPGRQSDFAESIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYS
APLYVDVTKRIIRKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTVYQNSEKDLTELGEC
PYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSGMF
VRMLSRASAKAGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKEILEHICYDFADTQMM
ELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAREILQKEMLPHVGVGEYCE
TKKAFYFGYIIHRLLLCALGRRQEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGY
VQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTFASTL
SHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAN
PILEFLEEWSTENFEEISAAVIPQATKIFVNGCWVGIHRNPDLLVKTLRLLRRRIDVNTE
VGVIRDIRLKELRLYTDYGRCSRPLFIVDQQRLLIKKKHIHALQQRETQEEGWHDLVAKG
FIEYVDTEEEETTMISMTISDLISARHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDH
NQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI
NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRES
TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDAQGQATRYTRRDHSTSLRH
SESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTL
EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG
YQMRGFETMYNGHTGRRLPAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS
RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRG
CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEVKPSKDGKKKGKLV
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atgtacgaaggcgaggagtatgatcccccagacgaggaggaggaggaggagatcacgcag
gaagatgcgtgggccgtgatcagcgcctacttcgaggagaagggcctagtccggcagcag
ctcgactccttcgacgaatttatacagaacaccatgcaagagatagtggacgagtctgcc
gacatcgagatacgtcctgagtcccagcataaccctggcagacagtctgattttgctgag
tcaatctacaagatcagctttggtcagatatatttgagtaagcctatgatgacggaatca
gatggagaaactgcaactttgttcccaaaggccgcgagattgcggaacttgacatactcg
gccccattatatgttgatgtcacaaaacggatcataaggaaagggcatgactgtgaagag
gtcacagagacccaggatttcactaaagtcttcattggaaaggttccaataatgctacgg
tctagttattgcactgtgtatcaaaactcggagaaagatctaacagaacttggggaatgc
ccatatgaccaaggtggatattttattatcaatggaagtgagaaggttctgattgcacaa
gaaaagatgagcaccaaccatgtctatgtatttaagaaaaggcagcctaacaaatatgcg
tacgtagctgaggtccggtctatggcagagacccaaaacaggccaccaagcggcatgttt
gtccgcatgctttctcgtgccagtgccaaagcgggctcttcagggcagtatattcgggct
actcttccatatattcggacagaaatcccaataattattgtgtttcgtgcattaggattt
gttgctgacaaagagatattagaacacatatgctatgactttgctgacactcagatgatg
gagttacttcggccatccttggaagaagcttttgtcattcagaatcaacaggtggcttta
gactacattgggaagcgaggatcaactgttggtgtcacgagggaaaagaggatcaagtat
gctagggaaattcttcaaaaagaaatgttacctcatgttggtgtcggggaatattgtgaa
acgaaaaaagctttctattttggatatatcattcatcggttattgctgtgtgcacttggc
cgaaggcaagaagacgatagggatcattatggcaataaacggcttgaccttgctggtcct
ttgcttggaggcctttttagaatgctgttcagaaagttgaccagggatgtgagaggatat
gttcagaagtgtgttgacaatggaaaagatgttaacttgcaatttgcaatcaaagctaaa
actatcactagtggcctcaagtactcccttgctactggaaattggggacaagcaaatgca
gctggtacaagagctggagtttcacaggtgttgaatcgcttgacttttgcttctaccctg
tcccatttgcgaaggttaaactctcccataggacgtgaagggaaattggcaaaaccccgg
caattgcacaattctcactggggaatgatgtgtcctgcagaaacaccggaagggcaggca
tgtggacttgtgaagaatctggcattgatggtctatataacagttggatcagcagctaat
cccattttggaatttttagaagagtggagcactgaaaactttgaggaaatatctgctgca
gttatccctcaagcgaccaaaatttttgtcaatggctgctgggtgggcattcatcgtaac
cctgatcttttggtgaagaccttgagactgctaagaagacggattgatgtcaatactgaa
gtgggagttatccgagatattcgtctgaaagaactacgcctttatactgactatggtcgt
tgcagccgtccattgtttattgtggatcaacaaaggctgctgataaagaaaaagcatatt
catgccctgcagcaaagggaaacccaggaagaagggtggcatgatcttgttgcaaaagga
ttcatagagtatgtagacacagaagaggaggagactaccatgatttccatgaccatttca
gatcttataagtgcaaggcacaatccagaggaagcatattctgaaacttatactcactgt
gaaatccatccatcattgatattgggcgtttgcgcttctattattccatttcctgaccat
aaccagtcccctcgtaatacatatcagtctgcaatgggcaagcaagcaatgggaatttat
gtcaccaactaccaattgcgaatggatacattagcttatgtcctttattatccacagaag
cctcttgttaccactcgtgccatggagcacttgcactttaggcagctaccagctggcatt
aatgccattgtcgcaattgcctgctattctggatataaccaagaagattctgttatcatg
aaccaatcatcaattgatcgtgggttcttccgatcgttattcttccgttcatacagggac
gaagagaagaagatgggaactcttgttaaagaagactttgggcgtccaaacagggagagc
actatgggcatgaggcatggatcttatgataaactggatgatgatggtctcgcacctcct
ggcacaagggtctcaggtgaagatgtgataattgggaagacaactcctattgctcaggat
gatgctcaaggacaagctacacggtacacaagacgtgatcatagcacaagcttacgccat
agtgaaagtgggatggtggatcaggttttattgacaacaaatgctgatgggttgaggttt
gtgaaagtgagaatgagatcggttcgaattcctcagattggagataagtttagcagtcga
catgggcaaaaggggactgttggcatgacttacacacaagaagacatgccgtggacgcta
gaaggcatcacaccggatattattgtgaatccacatgccattccttctcgaatgacaatt
ggtcagcttattgagtgcatcatggggaaggttgcagctcatatgggaaaggagggggat
gccactccttttactgatgtcactgtcgacaatattagcaaagcccttcataaatgtgga
tatcagatgcgtggttttgaaaccatgtataacggtcacacaggacggaggttgcctgct
atgatattccttggccccacatactaccagagattgaagcacatggttgatgacaagatc
cattcacgagggcggggcccggtgcagatccttaccaggcaacctgcagaaggacgctcg
cgtgatggaggccttcgctttggagaaatggagagagactgcatgattgcgcatggggct
gcacacttcctgaaagaaaggttgtttgatcagagcgatgcctatagggttcatgtctgt
gagcgctgtgggctgattgctattgccaaccttaagaagaactcgtttgagtgcagaggt
tgtaaaaacaagaccgacatcgttcaggtgcacataccttatgcctgtaagctgctcttc
caagagctcatggccatggccattgctcctaggatgcttaccaaggaagtgaaaccatcc
aaagatggtaagaagaaaggaaagcttgtataa
DBGET
integrated database retrieval system
