Magnolia sinica: 131245322
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Entry
131245322 CDS
T09699
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X1
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
msin
Magnolia sinica
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msin03041
]
131245322
Enzymes [BR:
msin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131245322
Spliceosome [BR:
msin03041
]
Complex C
Other components
Complex C specific factors
131245322
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
AAA_22
DEAD
HA2_N
AAA_30
AAA_19
AAA_7
T2SSE
ResIII
AAA_11
nSTAND3
AAA_29
Motif
Other DBs
NCBI-GeneID:
131245322
NCBI-ProteinID:
XP_058100668
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All DBs
Position
5:7787457..7831077
Genome browser
AA seq
700 aa
AA seq
DB search
MAEFWKPGSEKPRILEDEEGGVLFFSSPYSSSSSGFGYSSIEKQRQRLPVFKYRTAILYL
VENHATTIVVGETGSGKTTQIPQYLKEAGWAEGGRVIACTQPRRLAVQSVASRVAEEMGV
KLGEEVGYTIRFENLTNPGVTMIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSLSTD
ILLGLLKKIQRRRPELRLIISSATIEAKSMSSFFSSSRKRQQDTGEDCVPRTLPAILSVE
GRGFNVQIHYLEEPAPDYLQAAVSTVLAIHDEEPIGDILVFLTGQDDIDAAAQLLTENAQ
NRGRHSSGLIVLPLYSGLSRADQDLVFSPTPKGKRKVVLSTNIAETSLTLEGVVYVVDSG
FSKQRFYNPISDIESLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEMAAEGIP
EMQRSNLVSCVIQLKALGVDNILGFDWLASPAPEAMIRALEVLYSLGILDDDAKLTSPTG
FQVAEIPLDPMISKMILSANALGCSEEIITIAAILSIQSIWVSGRGAQKELDEVKLRFAV
AEGDHVTYLNVYKGFLHSGKSSQWCHKNFINYHAMKKVVEIREQLRKLAQRLGLAIKSCE
GDTQVVRKAVTAGFFTHACRLEAFSQGGMYKTIRSSQEVYIHPSSILFRVNPKWVIYYSL
ISTDRHYMRNVIAIDPSWLLEAAPNFYQQQKPNQAAHGLI
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggctgagttctggaagccagggtcggagaagcctcgtatcctcgaagacgaagaaggc
ggagtgctcttcttctcttctccttattcatcttcttcttcaggttttgggtattcgagc
atagagaagcagaggcagaggctcccagtcttcaagtaccggaccgccattctctaccta
gtcgagaatcacgccaccaccatcgtcgttggtgagactggcagcggaaaaaccacacag
attccccagtacctaaaggaagcaggttgggctgagggtgggcgggtaatagcttgcacc
cagccaagacggttggccgttcagtcagttgcttcaagggtagctgaagagatgggtgtc
aagcttggagaagaagttgggtatacaattcgttttgaaaatcttacaaatccgggtgta
actatgatcaaatttctcacagatggtgtgctacttagagaaatgatggatgatcctctt
ttgaccaagtatagtgttataatggtggatgaggcccatgaaagatctctttcgacagat
atattgttgggcctcctcaaaaagatccagcgccgtagacctgagttacgtctaatcatt
tcatctgcaacaattgaagcaaaatccatgtcctcttttttcagttccagcagaaagcgt
caacaggacacaggtgaagattgtgtacctagaacgcttccggccatactctctgttgaa
ggtagagggttcaatgtacaaattcattatcttgaggaacctgcccctgattatttgcaa
gctgctgtttcaactgtgttggcaatccacgatgaggaacctattggtgatatcttggta
ttccttacaggtcaagatgatattgatgctgctgctcagttacttactgaaaatgctcaa
aaccgtggaagacattcttcaggcttgattgttttgccgttgtactcggggctttcgcgt
gcagatcaggaccttgtgttttctcccacacctaaaggaaagaggaaagttgtgctatca
actaacattgcagagacatcattgactttagagggtgtggtttatgttgtggatagtggg
ttttcaaagcagcggttctataatccgatttccgatattgaaagcttggtagtggcacca
atttccaaggcatctgcaagacaaagggctggaagagctggaagagtacgacctgggaag
tgttataggctatatactgaagaatattttgtcaaggaaatggctgcagaggggattccg
gagatgcaaagatcaaaccttgtttcttgtgtaattcaattgaaggcgttaggtgttgat
aatatcttaggctttgattggttggcatctccagctccagaggcaatgattagagcactc
gaggttctttactcacttggaattctcgacgatgatgccaaacttacatccccaactgga
tttcaagttgctgagattccattagatccaatgatctcgaaaatgatattgtcagcaaat
gctcttggatgttctgaggagataattactatagctgcaattctctctattcagtctatc
tgggtttctggcagaggggcacaaaaggagttggatgaagtcaaactgcgattcgctgtt
gctgagggcgatcacgtgacttacctgaatgtgtataaaggattccttcattctggaaaa
tcttctcagtggtgtcacaagaacttcataaattaccatgctatgaagaaggttgttgaa
attagagaacaactcaggaaactagcacagcggctgggactagccataaaatcttgtgaa
ggtgatacacaggtagtaaggaaggcagttactgctggattttttacccatgcctgtcgc
ttggaagcattcagtcagggcggaatgtacaagaccatccggagttcacaagaagtatat
atccatccatcatccatactattcagagttaatccgaagtgggtgatctactattctctc
atctccactgaccggcactacatgcgcaatgtcatcgccattgatccctcctggctatta
gaggcggcacccaacttttaccaacagcagaagcccaaccaggcagcacatggtctcatt
tga
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