Magnolia sinica: 131245770
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Entry
131245770 CDS
T09699
Name
(RefSeq) pre-mRNA-processing factor 39-1-like isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
msin
Magnolia sinica
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msin03041
]
131245770
Spliceosome [BR:
msin03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
131245770
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
NRDE-2
TPR_12
Motif
Other DBs
NCBI-GeneID:
131245770
NCBI-ProteinID:
XP_058101435
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All DBs
Position
5:complement(23532742..23554891)
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AA seq
836 aa
AA seq
DB search
MGDTEPAVSQTSTVTEYPSMDYAPNDHCVVDSTSIPHGGAHAITGDSTLSVMLPGVDSAL
PDGSRLGDANADNMDPNLATKEAPSGLTMDDVNPSVGAADASKNGNDINDASQGSAVVDS
TQVIGYDSTNGNGVSEVKNFTPAGNAENGSVSNEVGGAVVVVEQQFAEGPAISTEEDRLW
SIVRVNSLDFNAWTALIQETEKVAEDNILKIRKVYDAFLVEFPLCYGYWKKYADNEARLG
AVDKVVEVYERAVQSVTYSVDIWLHYCMFAILTYGDPDTVRRLFERGLAYVGTDYLSYPL
WDKYIEYEYSQQEWSHLAMIYTRILENPIQQLDRYFNSFKELAGSRPLSEIRTAEEAAVV
AASLETVGEGDQGEVQPDGVEQSPKPVSAGLTEAEELEKYVAIREEMYKTAKEFDSKIID
FETAIRRPYFHVRPLDDAQLNNWHSYLDFIEGGDDFNKVVKLYERCLIACANYPEYWIRY
VLCMEASGSMELANNALARATQVFVKRQPEIHLFAARFKEQNGDIPGTRAEYQLVSSELA
PGLLEAIIKHANLEHRLGNTEAAFSVYEEAIAVERGKEQSLVLPTLLIQYSRFLYLVAGN
AEKAREILAGAFEHVQLSKLLLEAIIHLESIQSFPKRVDYLDSLVDKFVTPNLDNASMTS
VTEREELSSIFLEFLDFFGDAQSIKKAENRHAKLFLHQKSTSESRKRHAEDFLASDRAKQ
AKSYAGIPTQSVMGAYPNAQNQWGAAYGQPQAWPQAPQTQGQQWNPGYAQQAGYSGYAGY
SSYPQVPTSAPQAAAYGAYPQAYPPVQQAFPQPAQAFAPAQQQTAVTQQNYYGSYY
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgggagataccgaacctgctgtttctcaaacatcaactgtcactgagtacccttccatg
gactatgctcccaatgaccactgtgtggtcgattcaacttctattcctcatggcggtgct
catgctattactggtgattcaactttgtcagttatgctgccgggtgtagatagtgccttg
ccagatggttctaggttaggtgatgcgaatgcggacaatatggatccgaatctagcgaca
aaagaagctccctctggcttgacaatggatgatgttaatccgtctgttggagcagctgat
gccagcaagaatggcaatgatattaatgatgccagtcagggaagtgcagtagtggactca
actcaagtcattggttatgattctacaaatggcaatggtgtcagtgaagtaaagaatttc
acaccggcaggaaatgcagagaatggaagcgtttcaaatgaggttgggggagcagttgtc
gttgtcgagcaacagtttgcagagggtcctgcaatctctaccgaagaagatcggttgtgg
agtattgtgagggttaatagtttggacttcaatgcttggactgcgctcattcaagagaca
gagaaggtggcagaggacaacatattaaaaatccggaaagtatacgatgcatttttagta
gagttccccctgtgttatgggtattggaagaagtatgcggataatgaggcacgtttgggt
gctgttgacaaagttgtggaggtgtacgagcgagcagttcaatctgtgacctattctgtg
gacatttggttgcactattgcatgtttgctattttaacatatggagatccagatactgtt
cggaggctgtttgaacgaggattggcatatgttggaactgattacttatcctatcctctc
tgggataaatatattgaatatgaatattcacagcaagagtggagtcacttggccatgatc
tacacaaggatattggagaatcctattcaacaacttgatcgctattttaacagcttcaag
gagttggctggaagtcggcctttatcagaaattcggactgctgaggaagctgccgtggta
gctgcaagcctagagactgttggtgaaggagatcaaggcgaggttcagcctgatggtgtg
gaacaatctcccaaacctgtaagtgcaggcttaacagaagcagaggagttggagaagtat
gtcgccattagggaagagatgtataagacagctaaagagttcgattctaagatcattgat
tttgaaacagctattaggaggccttacttccatgtaaggcccctcgatgatgcacagctc
aacaattggcacagctatctggatttcattgaaggaggagatgactttaacaaggttgtc
aagttatatgaaagatgtctaatcgcttgcgccaattatcctgaatactggatccgatat
gtattatgcatggaagccagtggaagcatggagcttgcgaataatgctcttgctcgtgct
acccaagtctttgttaagagacaaccagagattcacctttttgctgctagattcaaagag
caaaatggggatattccaggaactcgtgccgagtatcagctggtttcttctgaacttgca
cctggtttgctagaagccataatcaagcatgcaaatctggaacatcgactggggaacaca
gaagccgcattttctgtatatgaagaggccattgctgtggaaagaggaaaagagcagtct
ctggtattaccaacactcttgatccagtactcccgatttctgtatttggttgctggcaat
gcagaaaaagcgagggagattctagctggtgcatttgagcatgtgcaactttcaaagctg
cttttagaggctattatacatctagagtcaattcagtcatttccaaagcgtgtcgattac
ttggattcactggtggataaattcgtaacaccaaaccttgataatgcttctatgaccagt
gtcactgagagggaagagttgtctagcatatttttggagtttttggatttctttggagat
gcacagtcgatcaagaaggccgaaaatcggcatgctaagctatttttgcaccagaagagc
acatcggagtccagaaaacggcatgctgaagattttctggcttcagacagggcaaaacaa
gcaaagtcttatgcaggcattccaactcaatcggtgatgggcgcctacccaaatgcgcag
aaccagtggggtgcagcttatggacaacctcaagcttggccacaggctccccaaacacag
ggacaacagtggaatcctggctatgctcaacaggctgggtacagtggatatgctggttac
agcagctacccgcaggtgccaacatctgctccacaagctgctgcttatggtgcttatcct
caagcgtatcctcccgtacagcaggccttcccacagccggcccaggcttttgcaccagca
cagcaacagactgcagtcacccaacagaattactatggcagttactattga
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