KEGG   Magnolia sinica: 131246624
Entry
131246624         CDS       T09699                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1 isoform X1
  KO
K14962  COMPASS component SWD2
Organism
msin  Magnolia sinica
Pathway
msin03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:msin00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    131246624
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:msin03019]
    131246624
   03036 Chromosome and associated proteins [BR:msin03036]
    131246624
Messenger RNA biogenesis [BR:msin03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     131246624
Chromosome and associated proteins [BR:msin03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     131246624
    COMPASS/SET1 complex (yeast)
     131246624
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40_Prp19 Beta-prop_WDR3_1st WD40 Beta-prop_EML_2 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_WDR36-Utp21_2nd WDR55 ANAPC4_WD40 EIF3I Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd Beta-prop_Aladin Beta-prop_EML Beta-prop_TEP1_2nd WDR90_beta-prop_4th WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_WDR36-Utp21_1st Beta-prop_IFT122_1st Beta-prop_SPT8 WD40_MABP1-WDR62_1st Beta-prop_Nup120_160 WD_LRWD1 Beta-prop_NUP159_NUP214 eIF2A WD40_RFWD3 Beta-prop_ACSF4 Beta-prop_RIG_1st
Other DBs
NCBI-GeneID: 131246624
NCBI-ProteinID: XP_058102915
LinkDB
Position
5:107904963..107920690
AA seq 334 aa
MQISLTELDDETVRSMSVGAVFPDYVGKINSIDFHRTEDLLVTASEDDSVRLYNTANATL
LKTTYHKKHGADRICFTHHPSSIICSSRYNLDSSGESLRYLSMYDNRCLRYFKGHKERVV
SLCMSPINDSFMSGSLDHSVRLWDLRVNACQGIMRLRGRPTVAYDQQGLVFAVAMEGGAI
KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNHIYVLDAYGGEKRCGF
SLEPSPNSTVEATFTPDGQYVVSGSGDGTLHAWSISRRNEVASWNTSVGVAACLKWAPRR
AMFVTASTVLAFWIPDYSKSTVESVAVENNNVGV
NT seq 1005 nt   +upstreamnt  +downstreamnt
atgcagatttctctcacagaactcgacgatgagactgtccgcagcatgtctgtcggtgcc
gtttttccagactatgtcgggaagatcaattcgattgactttcatcgaaccgaggatcta
ctagttacagccagtgaggatgactcggtgcgtttatacaatactgctaatgccacgctt
ttgaagaccacatatcataagaagcatggtgcagaccgtatatgcttcacccaccatccg
agctctattatatgctcttcaagatacaacttggattcctctggtgaatccttacggtat
ctttctatgtacgataatcgatgtctccgctacttcaaagggcacaaggaaagagttgtt
tcgctctgcatgtcgccaatcaatgacagcttcatgtcaggttcacttgaccatagcgtg
agattatgggatcttcgtgtaaatgcttgccagggaattatgcgtttgcgtggtaggccc
actgttgcatatgatcagcagggccttgtttttgcggtggcaatggaagggggtgctatt
aaattgtttgattctcgttcctatgacaagggcccatttgatacttttttagttggtgga
gatacagccgaggtctgtgatatcaagttcagcaatgatggaaagtctatgcttttaaca
acaacaaacaaccatatctatgttcttgatgcatatggaggggagaagcgttgtggattc
agtttggagccatctcccaattcaacggtcgaggcaactttcactccagatgggcagtat
gtggtgtcaggctctggagatggaaccttgcatgcatggagcatcagcagacgcaatgag
gtggcatcctggaacacctctgttggtgtggcggcttgcttgaagtgggcccctcgtcgg
gctatgtttgtcaccgcatctaccgtacttgcattctggatccctgactactcgaagtca
actgtggagtcagttgctgttgagaacaacaatgttggagtatga

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