Magnolia sinica: 131247924
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Entry
131247924 CDS
T09699
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
msin
Magnolia sinica
Pathway
msin03030
DNA replication
msin03420
Nucleotide excision repair
msin03430
Mismatch repair
msin03440
Homologous recombination
msin03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131247924
03420 Nucleotide excision repair
131247924
03430 Mismatch repair
131247924
03440 Homologous recombination
131247924
03460 Fanconi anemia pathway
131247924
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
msin03000
]
131247924
03032 DNA replication proteins [BR:
msin03032
]
131247924
03400 DNA repair and recombination proteins [BR:
msin03400
]
131247924
Transcription factors [BR:
msin03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131247924
DNA replication proteins [BR:
msin03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131247924
DNA repair and recombination proteins [BR:
msin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131247924
MMR (mismatch excision repair)
131247924
DSBR (double strand breaks repair)
HR (homologous recombination)
131247924
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
zf-CCHC
zf-CCHC_2
DUF223
zf-CCHC_5
zf-CCHC_3
CDC24_OB3
Motif
Other DBs
NCBI-GeneID:
131247924
NCBI-ProteinID:
XP_058103870
LinkDB
All DBs
Position
6:complement(2288604..2295624)
Genome browser
AA seq
887 aa
AA seq
DB search
MAVNLTKGAIAMVSKGDADLKPVLQVFDIRLVNTTHNTAERYRMLLSDGSHLQQAMLATQ
MNHIVKSGKLQKGSIVQLTEFICNLIQNRKIIIIINLEVIVEKCDLIGEPKQYGDGTTSS
APTQGRASMPAQSSSMDQSGIAAGNPQSYGGSLPAGTVTGQNVMSATPLHPRPDSVANPQ
SYGGSFSGPGRNATNGANAYMKAEPGVELSGSVSSSGSYSIQPQNPSHNNQSFSNPGAGG
GSRPSFNSHGHPAQSTYNQPPPMYTNRGPIVKNEAPARIIPIAALNPYQGKWTIKARVTA
KGELRRYNNPRGEGKVFSFDLLDSDGGEIRVTCFNAVADQFFDQIEVGRVYLISRGSLKP
AQKNFNHLNNQYEIFLESTSTVQPCLEEDSSIPRQQFNFRPIADIEGMETNSMVDLIGIV
SSISPSSTILRKNGTETLKRSLQLKDMSGRSVELTIWGSFCNAEGQQLQDMCDSGVPPVL
AVKAARVNDFNGKTVGTISTSQLFINPDFPEAHRLKEWFDREGRNAASLSISREMSTMGR
TDIRKTIAQIKDEGLGRSEKPDWITVKATVSFVKVDNFCYTACPLMVGDRKCSKKVNNNG
DGTWHCERCDQSFPECDYRYLLQLQIQDHTGLTWVTAFQESGEEIMGITAKDLYLLKYEE
QDDVRFGEIVRSVLFTQYLFKLKVKEETYSDEQRVKSTIVKAEKINFASESKYLLGLIDK
VPGEDPSAFFGRSANVVLESGISNAGFRQDAHPVGNSFGTGGSDRYGVASANSVGPYGSA
YSGVTGPVMGNSGVYLLCNSCGGAGHNSQNCPSIVNRQGQSMGGGFGDRTPHSGPDVGSA
SGKCFKCNQSGHWARDCPGSNSVPSSYGGSSASSRYGISNQQLGRGF
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atggcggttaatctgacgaaaggcgccatagctatggtcagcaagggagatgcggatttg
aagcccgttcttcaggttttcgacatcagattggtgaacaccacccacaacactgccgaa
cggtatcggatgctactgtcggacggatcgcatctgcagcaggcgatgctcgcgacgcag
atgaatcatattgtgaaatcggggaagctgcagaagggttcgatcgtccagctgactgag
ttcatctgcaatctcatccaaaatcgcaagatcattattatcatcaacttggaagtaata
gttgaaaagtgcgatcttattggggaaccaaagcagtatggggatggtactacttccagt
gctcctacacagggaagagcttccatgcctgcacagtcatcatccatggatcaatcaggg
atagcagctggaaatccacaatcttatggtgggtcacttcctgctggcactgtcacagga
cagaatgtaatgagtgcaacacctctgcaccccagaccagactcagttgcaaatcctcaa
tcttatgggggttcattttctggaccaggacgtaatgcaaccaatggagctaacgcatac
atgaaagcagaaccgggtgttgagctttctggatcggtgtcatcatctgggagttacagt
attcaaccacaaaacccaagtcataacaatcaaagcttttcaaatcctggagctggtgga
ggatcacgtccttcctttaattctcatgggcaccctgctcagtccacatataaccagccg
cctccgatgtacacgaatagaggacctattgttaagaatgaagctcctgcgaggataatt
cccattgctgctctgaatccctaccagggtaagtggacaatcaaggcccgggtgacagca
aagggggaacttagacgctacaacaaccctagaggggaggggaaggtcttctctttcgat
cttcttgattctgatggaggagaaatacgtgtgacctgctttaatgcggtggctgaccag
ttttttgaccagattgaggttgggagagtgtacttgatatcaagggggagcctgaaacca
gctcagaagaatttcaatcaccttaataatcaatatgaaatttttctggagtctacatca
acggttcagccttgtttggaggaggacagctctattccgaggcagcaattcaattttcgg
cccatagctgacattgaaggcatggagactaattccatggtggatctgattggtatcgtg
tcatcgattagtccctcaagcacaatactgagaaaaaatggtactgaaacgctcaaaaga
agtcttcagttgaaggatatgtctggccgaagtgttgagttaactatatggggaagtttt
tgcaatgcggagggccaacagctgcaagatatgtgtgattctggggtacctcctgtttta
gctgtgaaagctgcaagggtcaatgatttcaatgggaagacagtggggacgatttctaca
agccaattattcataaatcctgattttccggaggcacacaggctgaaggagtggttcgat
agggaggggaggaatgctgcatctctttctatttccagggaaatgtcgaccatggggagg
actgacatccgcaagaccatcgctcaaatcaaggatgaggggcttggaagatctgaaaag
cctgactggatcactgtgaaggcgacggtttcatttgtaaaagttgataatttctgctat
acagcctgtccattgatggttggggatcgcaaatgcagcaagaaggttaataataatggt
gatggaacatggcattgtgaaaggtgtgatcagtcctttcctgagtgtgactataggtac
cttcttcagcttcagatacaggaccacacgggcttaacatgggtaactgcattccaggaa
agtggcgaggaaatcatgggcattactgcaaaggatttgtacttgttgaaatatgaagaa
caagatgatgtaagatttggggaaattgtaaggagtgttctcttcactcagtatctgttc
aagttgaaagtgaaagaggagacctacagtgatgaacaacgtgtaaaatcgaccatcgtc
aaagcagagaaaataaattttgcttctgagagcaagtatcttctgggtttgattgataag
gttccaggagaagatcccagtgctttctttgggagatcagcaaatgtagttttggaatcg
ggaatatctaatgcaggattcaggcaagatgcacaccctgtagggaacagtttcggcact
ggcggttctgatagatatggggtagcatcagcaaattcggtgggaccatatgggagtgca
tatagtggtgttacaggcccggttatgggtaattcaggagtgtacctgctatgtaacagc
tgcggtggtgccggccacaactctcagaattgcccaagcattgtaaacagacagggacag
tcgatgggaggagggttcggtgataggacccctcattctggaccagatgttggtagtgct
tctggtaaatgcttcaaatgcaatcaaagtgggcactgggctagagactgtccaggatca
aattctgtcccgtcctcctatgggggaagcagtgccagtagtagatatggaatttctaat
caacagttaggcagagggttttaa
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