Magnolia sinica: 131247966
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Entry
131247966 CDS
T09699
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
msin
Magnolia sinica
Pathway
msin04120
Ubiquitin mediated proteolysis
msin04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
131247966
04120 Ubiquitin mediated proteolysis
131247966
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
msin04121
]
131247966
Enzymes [BR:
msin01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
131247966
Ubiquitin system [BR:
msin04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
131247966
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
FlxA
zf-C3HC4_3
zf-ANAPC11
zf-RING_5
zf-RING_11
zf-RING_16
zf-C3HC4_4
zf-HC5HC2H
zf_RING_Vps8
zf-RING-like
Motif
Other DBs
NCBI-GeneID:
131247966
NCBI-ProteinID:
XP_058103945
LinkDB
All DBs
Position
6:complement(3529847..3541064)
Genome browser
AA seq
560 aa
AA seq
DB search
MMRLRTYAGFSLVGAIAVIYHAFNSRGQFYPATVYLSTSKISLVLLMNMGLVIMCILWQL
IKCLFLGSLREAEVERLNEQSWRELMEILFAITIFRQDFSVSFLAMVTALLLIKALHWLA
QKRVEYIETTPSVPMLSHIRIVSFMGFLLVLDTLFLYSSLKYLIQTWQPSVSLFFSFEYT
ILATTTVATFVKYVFYVSDMLMEGQWERKAVYTFYLELVRDLLHLSMYLFFFLVIFLNYG
VPLHLIRELYETFRNFKVRVADYIRYRKITSNMNDRFPDATSEDLIASDATCIICREEMT
AAKKLRCGHLFHVHCLRSWLERQHTCPTCRALVVPPEDGTAATGGQHGVQSELQRNGSGG
AGISTQGPGGSRADDNLSLHQARLQAAAAAAAIYEKSYVYPSPNTILWSPGYASAPQVYG
PATEARHGENIDSTGETSTSGESRQPQHPTPSRYQNLAFPQIPPYAFIPFQVPNSNSMHV
ERVGSDPNVSASQREAQERFLQHQIEVLQSQLQLLQQQKPDEASATSGDVNPATADRKGK
TVAPSPLIPDCGRHEDIDSD
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggctccgaacatatgctgggtttagtttggtgggtgcaattgccgttatttat
catgcattcaacagtagaggccagttttacccagccacggtgtatctatcgacctcgaag
atcagtttggtgctccttatgaacatgggtttggtcatcatgtgcattctatggcagcta
atcaaatgtttgtttcttgggtctctccgagaagctgaggtagagaggttgaatgaacaa
tcatggcgggagcttatggaaattctctttgcaatcactattttcagacaggatttttcc
gtctcctttcttgcaatggtcacggcccttctgttgattaaggctttgcattggttggct
cagaagagggtcgagtacattgagacgactccatcagttccgatgctgtctcacattcgt
attgtatcatttatggggtttctacttgttctagatactcttttcttgtacagttctcta
aagtatttgatacagacatggcagccatctgtttcactcttcttttcatttgagtatacg
atactagcgacaacaacagtcgctacatttgtaaaatatgttttctatgttagtgacatg
cttatggaaggacagtgggagaggaaggcggtctacaccttctacttggaacttgttcga
gatctgcttcacctatctatgtatctcttcttctttcttgtgatattcttgaactacggt
gttccattgcacttgattcgagagctttatgaaacattccgtaacttcaaggttcgtgtt
gctgattatattcggtatcggaaaatcacttcaaatatgaacgatcgtttcccagatgca
acatctgaagacctcattgccagcgatgcaacctgcatcatttgtcgcgaggagatgacc
gcagcaaaaaagttgcgctgtggacacctcttccatgtccattgcctgcggtcatggtta
gaacggcaacatacctgccccacctgcagagctttggttgttcctcctgaagatgggaca
gctgcaactgggggacagcatggagtgcaatctgagcttcaacggaatgggtcaggtggg
gctggcatatccactcagggtcctggaggcagtagagcagatgataatctaagcctgcat
caggccaggctccaagctgctgcggctgctgctgcaatatatgagaaatcatatgtttat
ccttctccaaatacgatattatggtctccaggatatgcttcagcacctcaggtttatggg
ccagcaacagaggctcgccatggagaaaatatagattcaactggagaaacatccacctct
ggggaatcacgccagcctcaacatccaaccccaagcagataccaaaaccttgcattcccc
caaattccgccttatgctttcattccttttcaggtacccaattctaattctatgcacgtt
gagagagtgggaagtgatccaaatgtttcagcttctcaacgggaggctcaggaaagattt
ctccagcatcagattgaggttctgcagagccagctgcaacttctacaacagcagaagccg
gatgaagcaagtgccaccagtggtgatgtgaatcctgccacagcagacaggaaaggaaaa
actgttgcaccctctccattaattcctgactgcggccgtcacgaggacattgactcagac
taa
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