Magnolia sinica: 131250770
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Entry
131250770 CDS
T09699
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
msin
Magnolia sinica
Pathway
msin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131250770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msin03019
]
131250770
03012 Translation factors [BR:
msin03012
]
131250770
Enzymes [BR:
msin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131250770
Messenger RNA biogenesis [BR:
msin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
131250770
Translation factors [BR:
msin03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
131250770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
R3H
OB_NTP_bind
Helicase_C
DEAD
HA2_C
Ank_2
HA2_N
Ank
nSTAND3
ATPase
AAA_22
AAA_19
Ank_5
ResIII
PH_2
AAA_7
T2SSE
AAA_16
NACHT
Rad17
Motif
Other DBs
NCBI-GeneID:
131250770
NCBI-ProteinID:
XP_058107049
LinkDB
All DBs
Position
1:complement(67732339..67834017)
Genome browser
AA seq
1234 aa
AA seq
DB search
MGKRGQRKANGEREETLPNVLETTRIQITKRLEEFRAGDAEVYTFEPNLTNPERAVVHEL
CRKMGMVSKSSGRGKQRCVSVYKSKKKQVSVVKGKENVTCLTFSEETKDVLRDLFTNYPP
DDGELNEETPMNYSGNDNKGQGKQDSSFCRPSMGKAEIAKKVDLLASRINEAPHLRKIIE
DRSKLPIVSFKDVITSTLESHQVVLVSGETGCGKTTQVPQFLLDHMWGKGETCKVVCTQP
RRISAISVAERISYERGEDVGDSVGYKIRLESKGGKNSSIVFCTNGILLRMLIGMGAGTS
NKEVANESLKDVFEITHIIVDEIHERDRFADFMLAILRDLLPFCPHLRLILMSATINAER
FSQYFGSCPIIRVPGFTYPVKTFYLEDVLSILGLTEGNHLDPSVLGDADDVDLLTDEYRT
ALDESIDLALSSDEFDLLLELVSTSATPKIYNYQHSLTGASPLMVFARKGRIGDVCRLLS
LGADCYLCAKDGSTALHWAQQENQDEVVDILKKHMENDISRSAEVQQLLEKYLASVNPEH
IDTVLIERLLRKICIDSKEGAILVFLPGWDDINQTRERLLASPFFKDSSKFLIISLHSMI
PSVEQKKVFRRPPAGTRKIILSTNIAETAVTIDDVVYVIDSGRMKEKSYDPYNNVSTLHS
AWVSKASAKQRQGRAGRCQPGICYHLYSKTRAASLPDFQVPEIKRIPIEDLCLQVKMLNP
HCKIVDFIQKTLDPPVFETIRNAVIVLQDIGALTHDEKLTELGKKLGSLPVHPSTSKMLF
FAILMNCLDPALTLACASDYRDPFLLPMAPDEKKRATAAKLELSSLYGGHSDQLTIIAAF
ECWRCAKNKGQEAQFCSRYFVSSSTMNMLFSMRKQLQSELAKNGFIPEDASKCSLNAQDP
GILHAVLVAGTYPMVGRLLPPRRNNQRAVVETASGAKVRLHPHSSNFKLSFSKSIHHRPL
IIYDEITRGDGGMYIKKCTVVGPYPLLLLATEMVVAPAHDSDDGSDDDAEDSGSEDDEME
MQASSSGQQGERIMSSPENTVSVVVDRWLSFESTALDVAQIYCLRERLSAAILFKVKHPR
KVLPPALGASIYAIACILSYDGLSGISPAMESVDSLTSMVNAAGLDKTASGKQFRPPVAG
GRRGMGQNPSNPSGFLKSLISDMHIRSPSNLHKSKMPQSNSMHWNDPSTDNNFPSLTPLG
KHHTPQRTPFQGPSSSGATSRNGSFKRPRGSGPR
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atggggaaacgaggacagagaaaggcaaatggcgaaagggaagaaacccttcccaacgtt
ctggagactacccgcattcaaatcactaaacgtctcgaagagttccgagcaggcgatgcg
gaagtctatacctttgaacccaacttgactaatcctgaacgggccgtggtgcatgagctg
tgcaggaaaatgggtatggtatcaaaaagttcggggcgtggaaaacagaggtgtgtttct
gtttataaaagtaaaaagaagcaggtatctgttgtgaaggggaaagaaaatgttacttgt
ttgacattttcagaagaaacgaaagatgttttaagggacttatttacaaactatcctcct
gatgatggggagctgaatgaggaaacaccgatgaattatagtgggaatgacaataaggga
caggggaagcaagattctagcttttgcagaccttcaatgggcaaggctgagattgccaag
aaagttgatttgcttgcttctagaataaatgaggctccacacttaagaaagattattgaa
gatagatctaagcttccaattgtgtccttcaaggatgtcattacatccacattagaatca
caccaggtggtgctggtatctggtgagactggttgcgggaaaacaactcaggtacctcaa
tttctgttggaccatatgtggggtaagggtgagacatgtaaggttgtatgcacacagcct
cggcgtatatcagctatatcagttgctgagagaatctcatatgaaagaggagaagatgtt
ggagatagtgttggatacaagatacgcttggagtcgaaaggcgggaaaaactcttctata
gtgttttgtactaatgggattcttttgaggatgctgattggcatgggtgctggtacatcg
aacaaagaagttgcaaatgaatccttgaaggatgtttttgaaataacccatattattgtg
gatgaaattcatgaaagggatcgctttgctgattttatgcttgcaattctcagagacttg
cttccattttgtcctcatctacgtctgatccttatgagtgctactatcaacgctgagcgg
ttttctcaatattttggcagctgccctattattcgggtccccggcttcacttatcctgtc
aagactttctatttggaggatgtgctttctatcctgggattaacggagggcaatcatctc
gatccctctgtcttgggtgatgctgatgatgtcgatctcttaacggatgagtacagaact
gccttggatgaatctattgacttggcattgtccagtgatgagtttgatctcctgctagaa
ttagtttctacttctgcaactccaaaaatctataattaccagcactcattgacgggtgcg
tcgccattgatggtttttgccagaaaaggtcgaattggtgatgtttgtaggctcctgtca
cttggtgcggactgctatctatgtgctaaagatggaagcactgcattgcattgggcccaa
caagaaaatcaggatgaagttgtggatattttaaaaaagcacatggagaatgatatttca
aggtcagccgaagtgcaacagctacttgaaaaatatctagctagtgtcaatccagaacat
attgatactgttctaatcgagcgattgttgaggaaaatatgtattgattcaaaggaaggt
gcaattcttgtttttctgccaggatgggatgatataaatcaaacccgtgaaagattactt
gcttcaccgttttttaaagattcttccaagtttcttatcatatctcttcactccatgatt
ccatccgtggagcagaaaaaggtttttagacggccgcctgctggtacccgtaaaataatc
ctctcgactaacattgccgagactgcagttacgattgacgatgtagtttacgttatagac
agtggccgaatgaaagagaaaagttatgatccttataacaatgtatcaacactccattct
gcttgggtttcaaaagctagtgcaaaacagcggcagggtcgtgctggccgttgccaacca
ggaatttgttaccatctttattccaaaactcgtgcggcgtctcttcctgatttccaagtt
cctgaaatcaagcggataccaattgaggatctctgtttgcaggtgaagatgctcaatcca
cattgtaaaatagttgattttatacagaagactttggacccaccagtttttgaaactata
cgcaatgcagtcatagtccttcaagatattggggccttgacacatgatgaaaagctcaca
gaacttggcaaaaaactgggatctctacctgtacatccttcaaccagcaaaatgctgttt
tttgccatcttgatgaactgcctcgaccctgcactgactttagcatgtgcttctgactat
cgagatccctttcttcttccaatggccccagacgagaaaaagagagccacagcagccaag
ctcgagctttcctcattgtatggtgggcacagcgatcagctaaccatcatagcagcattc
gagtgctggagatgtgcaaagaataaaggtcaagaagcccaattctgttctcgatatttt
gtctcctcaagcaccatgaacatgttattcagcatgcggaagcagcttcagagtgaactg
gctaagaatgggtttattcctgaagatgcatccaagtgtagcctgaatgctcaagacccg
ggtatccttcatgcagtcctcgtggctggcacttatccgatggttggaagattgcttccg
cctcgtagaaacaatcaaagagctgttgtggagactgccagtggtgctaaagttcgcttg
catcctcattcctctaattttaagttatcgtttagtaaatctattcatcatcgccccctt
atcatttacgatgagataacacgtggggatgggggtatgtacataaaaaaatgtacggtt
gttgggccatatccgttattgttgctcgcaacggagatggttgtggctcctgcacatgat
agtgatgatgggagtgatgatgatgcagaagattctggcagtgaggatgatgagatggag
atgcaagcctcatcatcaggacaacaaggagaaagaatcatgtcctcacctgagaatact
gtttcggtggttgttgatcgatggctttcattcgagtccacagcacttgatgtcgctcag
atttactgcctgagagagcgattatctgcggcaatcttgttcaaagtaaaacatccacgg
aaagttctacctccagctctcggggcatctatttatgccattgcctgcattctctcttat
gacgggctctctggaatatcaccagccatggaatctgttgattcgctgacgtcaatggtg
aatgcagctggattagataaaacagcctcaggaaagcagtttcgacctccagtcgctgga
gggaggagagggatgggacagaatcctagcaatccaagtggttttctgaaatcactgata
agtgacatgcatattcgctctccttccaatttacacaagtctaagatgccacaatctaac
agtatgcattggaatgacccatcaactgataacaatttcccatcgttgacaccacttggt
aagcaccacacacctcagaggactcctttccaagggccatcttctagtggggccacgtca
aggaatgggtcctttaaacggccccgcggaagtggaccccgttaa
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