KEGG   Magnolia sinica: 131250858
Entry
131250858         CDS       T09699                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein isoform X1
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
msin  Magnolia sinica
Pathway
msin03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:msin00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    131250858
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:msin03041]
    131250858
Spliceosome [BR:msin03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    131250858
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_CDC20-Fz Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_Gbeta EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_EML Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 Beta-prop_WDR19_1st Beta-prop_TEP1_C WDR90_beta-prop_4th NBCH_WD40 Beta-prop_Aladin PRP4 Beta-prop_EIPR1 Beta-prop_DCAF4 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_Vps41 Beta-prop_SCAP Beta-prop_WDR41 eIF2A WD40_RFWD3 WD_LRWD1 Beta-prop_IFT140_1st Beta-prop_WDR75_2nd Beta-prop_HPS5 Nbas_N WD40_like Beta-prop_DCAF12 APP_E2
Other DBs
NCBI-GeneID: 131250858
NCBI-ProteinID: XP_058107202
LinkDB
Position
7:complement(3204076..3220697)
AA seq 603 aa
MRNSMWVHNHTHHSQGIMEEDTQVPVTLPETTATIPTDPTPISTTTPPPIQAPLPNVVPI
LPTPLPAPLHPPLAPPITPPVMRPLAPIPSIPPPVIRPLAPLPVRPPAIRPPLAPPSQNG
ETNGSDSGSDREGSPIDYEVSEESKQLRERHEKAVQDLLNKRRAYALAVPTNDLAVRARL
RRLGEPITLFGEREMERRDRLRSIMVKLDIEGQLEKLLKAHEEEEDGAAAAGEEGEGEGP
QQYPFYTEGPKELLEARIEIAKYSLVRAASRLERDRRRRDDPDEDLDAEMDYVLKQAGSF
TLDCSEIGDDRPLSGCSFSNDGKLLATSAMSGAVKIWSMPQVRKVATLKGHTERATDVAF
SPVHNHLATASADGTAKVWNAEGSLLKSLEGHLDRLARVAFHPSGKYLGTAGFDKTWRLW
DLNTGAELLLQEGHSRSVYGICFHRDGSLAASCGLDALARVWDLRSGRSILALEGHVKPV
LGISFSPNGYHLATGSEDNTCRIWDLRKKKSLYVIPAHSHLISQVKFEPQEGYFLVTASY
DTTAKVWSARDFKPIKTLAGHEAKVTSLDIAADGQCIATVAHDRTIKLWSSSGSGKDNTM
DID
NT seq 1812 nt   +upstreamnt  +downstreamnt
atgcgcaactctatgtgggtccacaaccacacacatcattcacagggcatcatggaagaa
gacacccaagtcccggttacacttccggaaactactgcaacaatacccactgatcccact
cctatttctaccactacgccacctcctattcaagctcccctccccaatgtcgtccctatt
ctccctacacctcttccagccccacttcacccccctcttgcccctcccatcacaccccca
gtcatgcgtcccctcgcacccattccatccattcctcccccagtcatccgcccactagca
ccccttcctgtccggccccctgccatccgcccaccacttgctccacccagccaaaatggt
gaaacaaatggttcggattcgggttcggatcgtgagggctcacccattgattatgaggtc
tcagaagagagtaagcagttacgagagcggcacgagaaagcagtgcaagatctcttgaac
aaacggcgggcttatgcattggctgtgcctaccaacgacttggctgttcgggcccgtctt
cgccggcttggtgagccgatcactctttttggggagagggagatggaaaggcgcgaccgg
ctgagatcaatcatggtgaagcttgatatagaagggcagttggagaagctcctgaaagcc
catgaggaggaggaagatggtgctgcagcagctggggaagagggggagggagaaggtcca
cagcaataccctttctatactgagggcccgaaggaactcttggaagctcggattgagatt
gccaagtattctcttgtgagggctgcatcgaggcttgaacgggataggaggagaagggat
gacccagatgaagatttggatgcagagatggattatgttttgaaacaggcaggcagtttc
acccttgactgtagtgaaattggcgatgatcgaccactttcagggtgttcgttttcgaat
gatggaaagctgcttgccacaagtgctatgagtggagctgttaaaatatggagcatgcct
caagtcaggaaggttgccaccttaaaaggtcacactgagcgtgcaactgatgttgcattt
tctcctgtgcacaaccatttagcgactgcctctgccgatggcactgcaaaagtctggaat
gctgaagggtctcttttaaaatcattggagggccatttggatcgtcttgcccgcgtcgca
tttcatccatctggaaaatacttgggtaccgctggctttgacaagacatggagattgtgg
gatcttaatactggggctgagttgttgcttcaagaaggccacagtagaagtgtttatggg
atctgcttccaccgtgatggatctttagctgcatcatgtgggctagatgcacttgctcgt
gtctgggacctgcgctcgggaagaagcatacttgccttggaaggccatgttaagccggtt
cttggaattagtttctcccctaacggttatcacttagccactggaagtgaagataataca
tgccgaatctgggatttaaggaagaagaaatctttgtacgtaataccagctcattcgcac
cttatttcgcaagtcaagtttgaaccccaagagggatattttctggtaaccgcttcatat
gatactacagctaaggtttggtcggctcgagatttcaagcctataaagacactagcggga
catgaagcaaaagttacatctctagatatcgctgcagatggacaatgcattgcaacggtt
gcacatgaccgtactatcaaattgtggtccagcagtggcagtggaaaggataacactatg
gatattgattag

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