Magnolia sinica: 131253301
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Entry
131253301 CDS
T09699
Name
(RefSeq) uncharacterized protein LOC131253301 isoform X1
KO
K06100
symplekin
Organism
msin
Magnolia sinica
Pathway
msin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131253301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msin03021
]
131253301
03019 Messenger RNA biogenesis [BR:
msin03019
]
131253301
Transcription machinery [BR:
msin03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
131253301
Messenger RNA biogenesis [BR:
msin03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
131253301
U7-dependent histone pre-mRNA processing factors
131253301
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_EZ
HEAT_2
Motif
Other DBs
NCBI-GeneID:
131253301
NCBI-ProteinID:
XP_058110233
LinkDB
All DBs
Position
8:complement(49674942..49820311)
Genome browser
AA seq
1347 aa
AA seq
DB search
MVGMMAVSARERAADLLNSSKLASDIPSKIQHLSLLKDLLLEREEPSLLAEIVPRLVDLQ
AHPLSPIRKFLAQLIGEIGLKHMGVLPEMLPVLISFLKDDTPAVARQAITTGTNLFRSLL
QKIAIQGLFSSEMGNSLESSWTWILKFKDAVCPIAFQPGSDGVRLLAVKFVEALILLYTP
DPNGSSQPPPHEAGNGKIAGFNISWLRSGHPLLNVGDLAVEASQSLGLLLDQLRFPSVKS
LSNSIIIILINSLSAIAKKRPLFYGRILPVLLGLDPSCSVIKGVQVSGAHHALKNAFLAC
LKCTHPGAAPWRDRLVDALKAMNAGELADQAVSQVDISESMVHTTADPHPVKEDKLLPQA
CDSAQLDIGRKRSIIQDVGDLVEDDDKSGKRSRPKNSYQCSTNDSLQTNANLTGGNPPLI
GLPASALDGDAGPVQQLVAMFGALVAQGDNAAEYLEILISSISSDLLAEVVMANMRYLPP
TRPKAEGEEEPILGFSSVPGLVGSNSSVAQPSSFLSSVMSLSSAFPKIASLLTKTQLSAS
HDIPDLHGRDEMRPVSMIDAAVACVGVNEVTATVASAAVHIPCISPVLAGTEKGRVSIPS
DTSDVGIVDSEIPGLNSTVNMDEKRDTLDSSHSSTADMQGTSQEQVLSTGNTFLLDFPSS
ASMLSSRSEAHSPKVAVADSSWTTSTATSVAFPSQNLLPKMSIPSVDLTDEEKDNLQKLA
FVRIIEAYRQITVAGGSHIRFSLLAYLGVEYPLELDSWGLLQKHILSDYLNHEGHELTLR
VLYRLFGEAEQDHDFFSSTTATSIYEKFLSTVAETLRDSFPASDKSLSRLLGEAPYLPKT
AFKLLECLCSPGSNEKNDKESQSGDRVTQGLSAVWSLILQRPSIRDICLKIALQSAVHHL
EEVRMKAIRLVANKLYPMPCIAKKIEEFASEMLLSVVHGCNVMEGVDTEESTTAVQKEAD
SEKVAREGQPSASATTKEFSSDTHQSGSSQSISSSSISEAQRCMSLYFALCTKKHSLLQQ
IFIIYKSIPKAVKQAVHRHIPILVRTIGSSPELLGIISDPPTGSESMLMQVLHILTDGAV
PSPELIFTVRRLYDSKLKDVEILIPVLSSLSKDEVLPIFPQLVDLPLDKFKAALARILQG
SSHTGAALTPAEVLIAIHGIDPERDGIPLKKVTDACSACFEQRQVFTHQVLAKVLNQLVE
QIPLPLLFMRTVIQAIGVFPSLVDFTMEILSRLVSKQIWKYPKLWVGFLKCTLQTKPQSF
SVLLQLPAAQLENALNKSPTLKPSLIVHASQPNIRSSLPRSTLVVLGLVQESQSANQPQT
SQTQTAGASNSGADAATEVTQESPAIS
NT seq
4044 nt
NT seq
+upstream
nt +downstream
nt
atggtgggaatgatggcagttagcgcgcgagagagggcggccgatctcctaaactcttcc
aagttggcttcagacataccctccaagatccaacacctcagcctcttgaaggatctgctt
ctagaaagggaggaaccttctctgctagcagagatcgttccacgtctcgtcgacctccag
gcacatcccctcagccccattcgcaagttcctcgcccagttgattggtgaaattggtttg
aagcatatgggggttttacctgaaatgttacctgttttgatatcgtttttaaaggatgat
accccagctgttgctcgacaagctatcacaaccgggacaaacttatttcgcagtttgcta
cagaagattgcaattcaaggtctattctctagtgagatgggtaactcacttgaatcatca
tggacatggattcttaagttcaaggatgcagtatgccctatagcttttcagcctggaagt
gatggagttcgactactggcagtgaagtttgttgaagcattgattcttctttacactcca
gatcctaatggttcttcacagccacctcctcatgaagctggtaatggaaaaattgcagga
ttcaatatatcatggctacgcagtggtcatcctttacttaatgttggagatttagcagtt
gaagctagtcaaagcttggggttgttgcttgatcaacttaggttcccttcagtgaaatca
ctcagtaactcaatcatcattatcttgatcaatagcctttcagccattgcaaagaaaaga
cctttgttctatggacgtattttacctgttttacttggtctggatccatcatgctctgtg
atcaaaggagtgcaagtttctggtgcacatcatgccttgaagaatgcattcctagcttgc
ctgaaatgtacacatccgggtgctgctccgtggcgtgaccgtttggttgatgctttgaaa
gcaatgaatgctggagagttggcagaccaagctgttagccaagttgatatttctgaaagt
atggttcacactacagctgatccacatcctgttaaggaagataaactcttgccacaagca
tgtgattcagcacaacttgatatagggaggaagagatccataattcaagacgttggcgat
ctggttgaagatgatgacaaatctggaaaacgatctagaccgaaaaattcctaccaatgt
tcaaccaatgactcacttcagacaaatgctaatttgactgggggcaaccctcctttgatt
gggttgccagcttctgctttagatggggatgcgggacctgtccagcaacttgttgccatg
tttggtgcactggttgctcaaggtgataacgctgctgaatatttagagattcttatctca
agtatatcctctgatttattagccgaagtggtcatggctaatatgcgatatcttccgcct
actcgccccaaggctgagggagaggaagagccgatacttggcttcagttctgttccagga
ttagttggcagtaattcctcagtcgcgcagccatcatcatttttatcaagtgttatgtct
ctgtctagtgcatttccaaaaatagcgtccttattaactaaaacacaactatcggcttct
catgatattcctgacctacatgggagggatgagatgcgaccagttagcatgattgatgct
gctgtagcatgtgttggagtaaatgaggtgactgcaacagtagcatctgctgctgttcac
attccgtgtatctcaccagttttggctggaactgaaaagggcagggtatctattccatca
gatacaagtgatgtgggcattgtagatagtgaaatacctggtctgaattccactgttaat
atggatgaaaagcgagacacactggattcttctcattcatctactgccgatatgcaagga
accagccaggaacaagttttgagtacaggcaacacatttctgcttgattttccttcatct
gcttcaatgttatcttctaggtctgaagcacatagccccaaggtagctgtggcagattca
agctggacaacttcaactgcaacttctgttgctttccctagccaaaatttacttcctaaa
atgtccatacctagtgttgacctgacagacgaagagaaggataatctacagaaattggca
tttgttcgcatcattgaggcttacaggcaaatcacagtagcaggaggctcgcatatccgc
ttttccttgctggcttatttgggagttgagtatccactggagctggactcatgggggctt
ctacaaaagcatatattatcagactatttgaatcatgagggacacgagttgacattacgt
gtcctctacaggttatttggagaagcagaacaggatcatgacttcttctcatctacaact
gccacttcaatttatgaaaaatttctgtctactgtggctgaaacacttcgagactcattt
ccagcttcggataaatctctaagtagattacttggtgaagcgccttatcttccaaagaca
gcctttaaactgttagagtgcttgtgctctcctggaagcaatgaaaagaatgacaaggaa
tcacaaagtggagaccgtgttactcaaggtctcagtgctgtatggagcttgattttgcaa
aggccttccattagagatatttgtttgaagattgctttacagagtgcagttcatcacttg
gaagaagttcgaatgaaggcaatacgtttggttgcaaacaagttatatcctatgccatgc
attgctaagaaaattgaagaatttgcaagtgaaatgctgctttctgtagtacatggttgt
aatgtcatggagggtgtggatactgaagaatcaactactgcagtgcagaaggaagccgat
tcggaaaaggttgcaagagaaggacagccatcagcaagtgcgacgactaaagaattttcc
tctgatactcatcagtcaggttcttctcaaagtatttcatcctcgtcaatctcggaggca
caacgatgcatgtcactctatttcgcgctttgcactaagaagcattcccttcttcagcaa
atttttattatctacaaaagcattccaaaggctgtaaaacaggcagttcatcgccatatc
cctatcttagttagaactataggctcttcacctgaactccttggcattatttcagatcca
ccaactggaagtgagagtatgctaatgcaggttttgcatatattaacggatggggcagtt
ccttcacctgaattaatattcactgtccgaaggttatatgattcaaaactcaaggatgta
gagattctcattccagtattgtcatctctatcaaaagatgaggtcttacctatctttccc
cagcttgttgatcttccattagataagttcaaagctgcactggctcgaatactgcaggga
tcatctcacactggtgctgcccttactcctgctgaagttttaattgccatccatgggata
gatcctgagagagatgggatacccttaaaaaaggtcacagatgcatgctctgcttgcttc
gagcaacggcaagtgtttacgcaccaagtattggcaaaggtgttgaatcaattagtcgaa
cagattcctctccctttattgttcatgcgtactgtcatacaagcaatcggtgttttccca
tccctggtagactttaccatggagatcctctctcgtcttgtgagcaagcagatctggaaa
tacccaaaattatgggtgggattcttgaaatgcacacttcagaccaaacctcaatctttc
agtgtgttgcttcagttaccagcagcacagcttgaaaatgcattaaacaaaagccccaca
ctgaagccttcattgattgtgcatgctagccaaccaaacatcagatcgtcattgcccagg
tcaacgctggtggtgctgggtcttgttcaagaatctcagtctgcaaatcagccacagaca
tctcagactcaaactgcaggtgcaagcaactctggtgcagatgctgccacggaggtgacc
caagaatctccagccatcagctga
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