Magnolia sinica: 131254288
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Entry
131254288 CDS
T09699
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
msin
Magnolia sinica
Pathway
msin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131254288
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msin03019
]
131254288
Messenger RNA biogenesis [BR:
msin03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131254288
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
131254288
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
131254288
NCBI-ProteinID:
XP_058111264
LinkDB
All DBs
Position
8:65694729..65698513
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AA seq
339 aa
AA seq
DB search
MLPSRPSCVYRKPIRIRNVDSLNVESEFRIISGFLKDYPFISMDTEFPGVVYHNVPDTPD
SVASDRYALLRANINALKLIQVGLTFSDSASNLPDLGTNYCYVWQFNFNFDPWCDLHAPE
SIELLRKNGIDFERNRFYGIDEARFGFLMKLCGLVGNNCFSWITFHSAYDFGYLIKVVTQ
RELPDEIGEFLKLMKDIFGYKVYDIKYLMRFCHNLYGGLERVANELGVDRAVGKCHQAAS
DSLLTLHVFTRLKDRGFQLYVPDHCGVLYGLKYPSGNLRILIEEKAIGSSSSKDAAALSS
SLDGVYKVRFKGARVLHSSYLGGSSDSSDDEDQIGVYAV
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgctaccatcaagacctagttgtgtctacagaaaaccaattcgtatcagaaatgtggat
tcgttaaatgtggagtctgagttccgcataatcagcggcttcctcaaagactaccctttc
atctctatggacactgagttccctggtgtcgtctaccataacgtgcccgatacacccgac
tctgtagccagcgatcgatacgcactccttcgggcgaatataaacgcgctcaagctcatc
caagtcggactcactttctccgactcagccagcaaccttcctgatttggggaccaactac
tgttacgtctggcaatttaatttcaacttcgatccatggtgtgacctccacgcacccgaa
tcgatcgaactattgcgtaagaacggcattgacttcgagcgcaatcgattctacgggatt
gatgaggcccgtttcgggttcctcatgaagctatgcggacttgttgggaacaattgtttt
agttggatcaccttccacagtgcttacgactttggctatctgataaaggtggtcactcag
agggagctaccggatgagattggcgagtttctcaaattgatgaaagatatatttgggtac
aaggtttatgacataaaatatctcatgaggttctgtcacaacttatatggagggttggaa
cgtgtggccaatgaattgggggtggacagggctgttgggaaatgccaccaagctgcatca
gatagcctgctaacattgcatgtttttacgcggctcaaggatagaggttttcagctgtat
gttcctgaccactgtggagtattgtatggattaaaatacccttcgggaaatctgaggatt
ttgattgaggagaaggcgatcggatcaagtagtagcaaggatgcagctgcattgtcgtct
tctttggatggagtctacaaagtgcgatttaagggagctagggttctccattcttcctat
cttggtggatcctccgattcttccgacgatgaagatcagattggggtttatgctgtttga
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