Magnolia sinica: 131254340
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Entry
131254340 CDS
T09699
Name
(RefSeq) uncharacterized protein LOC131254340 isoform X1
KO
K19026
spatacsin
Organism
msin
Magnolia sinica
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msin03400
]
131254340
DNA repair and recombination proteins [BR:
msin03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
131254340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
131254340
NCBI-ProteinID:
XP_058111313
LinkDB
All DBs
Position
1:112842173..113001085
Genome browser
AA seq
3286 aa
AA seq
DB search
MVIPYEAVDGPAVMQLRKWSESQVQLNLSEFHEAFLSPTRELLLLLSYQCEALLLPLIAG
EVSPSISINGDYSDRYYSEGLQKPSTSPFCSPEWTASGRSDSLYITPSTSEPVKTVPDKA
FSHQRNPSTSKQYPVVCDVKSLAWGHCGDAYDQRKDSVFKELLVVSGNHGVTVHAFRYLD
KNNEMIKSAPKDGLVRGRWVEWGPSAASICNPQAEEQLCSYPQSSESSCKVKWASSTKGN
QQDGHGSAGHDDSSDSSSTPKKWFRSFLAEVETIKSEGNFLARFPAKSSFPHSAEVVSFA
ITFSNSIFLDFLSCANPVSNANENQREDTMLGQVVDTSIYPFTCSCVFSSSSYRLIGMVL
TLPEPVPIDITQEGGQNTGRNVVVVAMLYQWGIQWVSSVDLPDFSPKSGPEFEWMDFKFS
EEYLLCLNSLGLILVWGATTGKLVARLDVLQCCGMNGKPPSGAQHSMPSIEGAVAPDNTG
TQVEQGNEVHEKTNHLAGGYFFTKRIFKKLMVALNSSHFAAVDECGVVYVICADDFISEK
YYPSNKLSHFHHGGFGILAGWKVAGSEIGGQRVFSDLLKGQGSKISWMENDKFPSTDHND
DVKHWKELKRHIQGGGSQFDSLNGFSSSSQEKGLRSPLSDISTMPIRRILLPICGFDRGD
SIYFSPFGITRLVKCNVKDQRGFKIAHSRLTVASSVLDEGGLNSCKHPNKFSLLEQEQVF
PGQAIGCSFQGNFYVISQDGLSIVLPSISVSSSMLPVELIGYWRPSLSVCSGYQAESFLE
IKESKELWPSWKLEVLDRALLYEGPEVADRLCLDNGWDLKISRMRRLQLALDYLKYDEID
RSLEMLVDVNLAEEGILRLLFTSVYQILCKVGNDNEVALASRFLALAACFATKMVRRYGL
VEHKKERFIFQGVKGSKVFYLQPTLPKKIESEINNLRRLQEMAHFLEIIRKLQCRLSTKC
KRPGPGVVDNMNASSLADASATQDDSALPILNVDPISLGVKDVLEVQNQRELAFPVSDSA
LDSTEKLTLSTTDSLVSTNHLGSGSFHENFVPDSHGLLQRRKMIPLENPKDMIARWEIDN
LDLKSVVKDALHSGRLPLAVLQLHIQRLRDLDTTEKEPHDTFNVVRDVGRAIAYDLFLKG
ETGLAIATLQRLGEDIEISLKQLVFGTVRRSLRMQIALETKRLGYLGPYEWKMLERISLI
ERLYPSSSFWGTYLSRQKQLNEVSSDQSLPKGYRLQLSCSMASDDYTIECGEVDGAVLGS
WTNIDESSSFPLVDEDNTHAGYWAGAAVWSDAWDQRTMDRIVLDQPFLMGVHTLWESQLE
YHICHNDWDEVSRLLDMIPPSLLLDGSLQVNLDGLHSAATVECSDRMPDHVNYFLPADEL
DAVCINVPNIKIFRFSAVNMCSMWLRMLMEKKLARKFIFMKEYWEGTAKIIPLLARAGFI
TNASEISYQGGSAESLSDLDIGNITEEFHEDTLQSLHKLVIHHCARYNLPNLLDLYLDHH
KLILDNDSLGSLLEAAGDCHWAKWLLLSRIKGREYDASFSNARSIMSHNVVLGNNINVPE
IDEIIRIVDDMAEGGGEMAALATLMYAPAPIQKCLCSGSVNRHCSSSAQCTLENLRPGLQ
QFPTLWRTLVSACFGQDADGASLAFNAKRVFGKSALSDYLNWRDQIFSSTGGDTSLMQML
PCWFSKAIRRLVQIFVQGPLGWQSLGGVTHTGESFMHRNSYADSIANENAEIRAISWEAA
IQKNIEEELYASSFEENGFGVEHHLHRGRALAAFNHLLGIRALKLKSTTAHQESSGASMH
GQTNIQLNVQKLIAPLAQNEESLLSSVMPLAILHFEDSVLVASCAFLFELCGLSASMLRV
DVAALRRISSFYKSIDYNEQHKHLSPKGSAFCAVSSEGDLTVSLARALAEDYQHHDNLGI
QQKDTPNRVAASRQPSRALMAVLQHLEKVSLPVFVEGNTCGSWLLSGSGDGTEFRSQQKD
ASRHWNLVTAFCQLHHLPLSTKYLAVLAKDNDWVGFLTEAQVGGFPFDMVIQVASEFSDP
RLRTHILTVLRSMNLTRKKATSSTNPMSSGKSNDISFSIESDIMIPVELFGILAECEKQK
NPGEALLIRAKDLRWSLLAMVASCFPDTSPLSCLTVWLEITAARETSLIKVNDISSQIAN
NVGAAVMATNALPTGSRALMFRYNRRNPKRRHLMEQTSGNGPSGALFDVYSSSSATTISA
AQEITAEEARRKQADEQIKVPTDPDEGLISLSKMVAVLCEQHLFLPLLRAFEMFLPSCSL
LPFIRSLQAFSQMRLLEAAAHLASFSSRIKEERHHMPINIGKDGKIGTTWLSSTAVKAAD
AMLSTSPSAYEKRCLLKLLAEADFGDGGSAAACFRRLYWKINLAEPSLRKGDELYLGNET
LDDDSLLTALEKNGHWEQARNWARQLESSGAPWKSVVHHVTETQAEAMVAEWKEFLWDVP
EERAALWGHCQTLFIRYSFPALQAGLFFLKHAEAVEKDIPARELHEMLLLSLQWLSGTIT
QSSPVYPLHLLREIETRVWLLAVESEAQIKTEGDLTSTNYSQNPVAGNSSSIIDQTAIII
TKMDNHLNAMRAKATERNDMREINQTHFRQPQVLDGNSPTMSGGGTKMKRRAKTYLPSRR
SLVDAVDRTGDLDDSSASLHFKTNNDLVRSLQLQEENVRIEASLSGWEERVGPAELERAV
LSLLEFGQITAAKQLQQKLSPSHMPSEFVLVDAALKLAAISSPSSSGEASTPMLDQEALS
VIQSYNILSDNNLTDSLQDLEILATKFNEGCGRGLCKRIVSVVKAANVLGLSFSEAFGKR
PIELLQLLSLKAQDSLEQAKLLVQTHVMPLASIARILAESFLKGLLAAHRGGYMDSQKEE
GPAPLLWRFSDFLKWAELCPSEPEIGHALMRLVITGQEIPHACEVELLILAHHFYKSSAC
LDGVDVLVALAATRVESYVSEGDFSCLARLVTGVSNFHALNFILGILIENGQLELLLHKY
SAADTATGTGDGVRGFRMAVLTALKHFNPHDLDAFAMVYNHFDMKHDTASLLESRATQSM
QNWRFRNDKEQTEDLLESMRFFIEAAEVHSTIDAGNKTRRACAQASLLSLQIRMPDIAWI
KLSETNARRALVEQSRFQEALIVAEAYGLNQPSEWALVLWNQMLKPELTEQFVAEFVAVL
PLQPSMLGELARFYRAEVAARGDQSHFSVWLSPGGLPAEWARHLGRSFRSLLKRTRDLRL
RMQLATVATGFGDVINACMKALDRVPDNAGPLILRKGHGGTYLPLM
NT seq
9861 nt
NT seq
+upstream
nt +downstream
nt
atggttattccttatgaggctgtagatggtcctgcggtaatgcagttgcgtaaatggagc
gaatcgcaggttcaactcaacctttcagaattccatgaagcttttctctctccaacaagg
gagctattgctgttgctttcatatcagtgtgaagccttgttacttcctttgattgctggg
gaagtatctccttccatatcaataaatggagattattcggacagatactattctgaaggt
cttcagaagccaagtacttcacctttttgttctcctgaatggacagcctcaggcaggtca
gattcattgtacattaccccatccacatctgaacctgtaaaaactgtacctgacaaggct
ttttcacatcaaagaaatccttcaacatctaagcagtaccctgttgtttgtgatgtaaag
tcattggcttggggtcactgcggggatgcatacgatcagcgtaaggattctgtttttaag
gaactccttgttgtttctggtaatcatggtgttactgtccacgcttttcgttacctggat
aaaaataatgaaatgatcaaatctgctcccaaggatgggcttgtgcgaggtaggtgggtg
gagtgggggccttctgctgcttccatttgcaatccgcaggcagaggagcagctctgctct
tatccccaaagttctgaaagttcctgcaaagtaaagtgggcctctagtaccaagggaaat
caacaggatggtcatggttcagcaggtcatgatgactcttcagatagcagttccacacca
aaaaaatggtttcgaagtttccttgctgaagttgaaactatcaaatctgagggcaacttt
ttggccaggttcccagcaaagtcttcatttcctcattctgcggaagttgtttcatttgct
attacttttagcaattctatattcttggatttcctttcttgtgcgaatcctgtatcaaat
gcaaatgaaaaccagagggaagatacgatgttaggacaagtggttgatacatcaatatat
ccattcacatgttcttgtgtgttctccagctcttcataccgtttaattggtatggttctg
acactaccagaacctgtacccatcgacattactcaggaaggtggacagaatacaggcagg
aatgttgtagtggttgctatgctttatcagtgggggatacagtgggtttcttcagttgac
ctccctgatttttctccaaaatcggggccggaatttgaatggatggacttcaaattttct
gaggaatatcttctttgcctcaacagtttaggcttaatcctagtttggggtgcaacaaca
ggaaaattggttgctcgtcttgatgttttacagtgctgtggaatgaatggaaaaccaccc
tctggagcgcaacattcaatgccatccatagagggtgccgtggctcccgataatactggc
acacaggttgaacaaggtaatgaagtccatgagaagacaaatcaccttgctggaggatac
ttcttcactaaaagaatcttcaaaaagttgatggtggccttgaattcttcgcactttgct
gctgttgatgagtgtggagtagtatatgtaatttgtgcagatgactttatttcagaaaag
tattatccaagtaacaaattatcacacttccatcatggtgggtttggcatattggctgga
tggaaggttgcaggttctgagataggtggtcagagagtattttctgatcttttaaaaggt
caaggttcaaagatttcatggatggaaaatgataagtttccatcaacagaccacaatgat
gatgttaaacattggaaggagctaaaacggcatattcagggtggaggaagccaatttgat
tccttgaatggtttttccagttcgtcacaggaaaagggtctccgtagtcccctgtcagat
atttcaactatgcccatccgtagaatacttcttcctatatgtggatttgacaggggggat
tctatttatttttctccgtttggaatcactcgacttgttaaatgcaatgtgaaggatcaa
aggggttttaaaattgctcattcccgtttaactgttgcttcatcagttcttgatgaagga
ggcttgaattcatgcaagcaccccaacaagttctctctccttgagcaggaacaagtcttt
cctggacaggctattggttgttcatttcaaggaaatttctatgtgatatcacaagatggt
ctctctattgttcttccctcaatttcagtttcatcaagcatgctgcctgtagaattaatc
ggatactggcgaccgagtctcagtgtgtgcagtggatatcaagcggaaagtttcttggaa
attaaagaatctaaagaactgtggccatcttggaaattagaggttttggacagggccctt
ctatacgaaggcccagaagtggctgatcgcctatgtttggacaatggatgggacttgaaa
atttctcggatgcgtcgcctgcagttggccttggactacttgaaatatgatgagatagat
agatctttagagatgcttgtggatgtgaatctggcagaagaaggcattttgaggttgctc
tttacttctgtttatcagatcctttgtaaggttggaaacgataatgaggtagctctggca
tcaagatttctggctttagctgcctgctttgcaaccaaaatggtccggagatacgggtta
gtggagcacaagaaagagaggttcatctttcagggtgttaagggttcaaaagtgttttat
ctacagccaacattaccaaagaagatagaaagtgagatcaacaatttgagaaggcttcag
gagatggctcactttttagaaatcatcaggaaattgcaatgccgacttagtacgaaatgc
aaaaggccaggaccaggagtggtggataatatgaatgcatcaagtctggcagatgccagt
gcaacacaggatgattctgctcttccaattcttaatgtagaccctatctcactgggggtg
aaagatgtactggaagttcagaaccagagggaattagcatttcccgtatcagactcagca
ttggatagcactgaaaagcttactttgtcaacgacggattccttggtctccacaaaccac
ttgggttctgggagcttccacgaaaattttgtccctgactcgcatggtttgcttcaaaga
aggaaaatgattcctttggaaaatccaaaggatatgattgctcgttgggaaattgataat
ttagacctaaaatctgttgtcaaagatgctttgcactctggtcgtctccctttagcagtt
cttcaacttcacattcaacgtttaagggatttggataccaccgagaaagagcctcatgat
acttttaatgtagttcgtgatgttggaagagctattgcttatgacctattcttaaagggg
gaaacaggactagctatagcaacattgcaaagacttggagaagacattgaaatcagcctc
aaacaattggtattcggaactgtgagaagatctcttcgaatgcaaattgcattggagacg
aaaagacttggatacctgggaccatatgaatggaagatgttggagagaatatcccttatt
gagaggttgtatcccagcagcagcttctggggcacatatctcagtaggcagaagcaactc
aatgaagtttcctctgatcaaagtttgccgaagggatatagattgcagctgtcttgttca
atggcatctgatgactataccattgaatgcggtgaggttgatggagctgttttaggttct
tggacaaatattgatgaaagctcttcttttcctctggtggatgaagataatactcatgct
ggatattgggcgggtgctgctgtctggtctgatgcctgggatcaaagaactatggatcgt
atagttctggatcaaccatttcttatgggagttcacacattatgggaatcacaactggag
taccatatatgtcacaatgattgggatgaggtatccaggctcctagacatgattcctcca
tccttgttattggatggaagtctccaagtcaatttggatggattacattctgctgctact
gttgagtgcagcgacaggatgcctgatcacgttaattatttcctccctgctgatgaattg
gatgctgtttgcataaatgtaccaaacattaaaattttcaggttttcagctgttaatatg
tgctccatgtggttaagaatgctcatggagaagaaactagctagaaagtttattttcatg
aaggaatattgggaaggcactgcaaagattataccgcttctggcacgtgcaggctttatt
accaacgcatctgaaatttcctaccagggtggatctgccgagagtttatcagatcttgac
atcggaaatatcactgaagaatttcacgaagatactttgcaatccttgcacaaacttgta
atacatcattgtgcaagatataacttgcctaaccttctggacctctacctggaccaccac
aaattgattctagataatgattctcttggttcattactggaagctgcaggagattgtcac
tgggcaaagtggttgctcttatcgaggataaaaggacgtgaatatgatgcatcattttct
aatgctcggtcaattatgtctcacaatgtagttcttggtaacaatatcaacgttcctgag
attgatgaaatcatacgtatcgttgatgatatggctgaaggaggaggagaaatggcagct
ttagccaccttaatgtatgcccctgcccccattcaaaaatgcctgtgcagtggaagtgta
aataggcattgtagctcttcagcccagtgcacattggaaaatctaagacctggtcttcaa
cagttccccactctgtggcgtactttggtttcagcgtgttttggacaggatgcagatggc
gcttctttggcctttaatgcaaagagggtatttggcaagtctgctttgtcggactatttg
aattggcgtgatcagattttctcctctactggaggtgacacttcgttgatgcaaatgctc
ccatgctggttctcgaaggctatacgaagattggttcagatttttgtccagggccccctt
ggatggcaatctttaggaggtgtcacacacacaggagaatcatttatgcacagaaacagt
tatgctgattcaatagcaaatgaaaatgctgaaatccgtgccatatcttgggaagcagct
atccagaaaaacattgaagaggaactatatgcttcttcatttgaggagaatggatttgga
gttgagcaccacttgcatcgtggccgtgcactagcagctttcaaccatctccttggcata
cgcgctcttaagttaaaatcaacaactgcccatcaggaatcatctggagcttcaatgcat
ggacaaactaatatccaattgaatgtgcagaaacttattgcacctttggctcaaaatgaa
gaatcacttctttcatccgttatgccacttgctatcttgcactttgaggactctgttctg
gttgcatcctgcgcttttctttttgagctttgtggtttatctgctagcatgcttcgtgta
gatgttgccgccttacgacgaatttcttcattttacaagtccattgattataatgagcag
cataagcatctttcaccgaagggatctgcattttgtgcagtatccagtgaaggtgatctt
acggtttctcttgctcgagcattggcagaagattatcagcaccatgataatcttggcatt
cagcaaaaggatactcccaatagagttgcagccagtagacaaccttcacgggctctaatg
gctgtcctccagcatttggaaaaagtgagcctgccagtttttgttgaagggaatacctgt
ggatcttggcttttaagtggcagtggtgatggaactgagttccgatctcaacaaaaagat
gcaagccggcactggaatttggttacagctttctgtcagttgcatcatcttccgctaagc
acaaaatatcttgctgtgcttgcaaaggacaatgactgggttggatttctgacggaagct
caggtcggggggttcccatttgacatggtcatccaagtagcatctgagttcagtgatcca
aggctcaggacccacatattaacagttctgagaagcatgaatttgacaaggaaaaaggct
acctcttcaacaaatccaatgtcttcaggaaaaagtaatgacatttccttctctatagaa
agtgacattatgatccctgtggaactctttgggattcttgctgagtgtgagaaacagaaa
aatccgggggaggcccttctgataagagcaaaagacttgcgctggtctcttttggcaatg
gtggcgtcatgctttccagatacatctcctctctcatgcttgacagtttggcttgagatt
accgcagcaagggagacctcattgatcaaggtgaatgacatttcctctcaaattgcaaat
aatgttggagcagctgtaatggcaactaatgccctgccaactggtagtagagcccttatg
tttcgttacaatcgaaggaacccaaaacggaggcatctgatggaacaaacatcaggaaat
ggcccatctggtgccctgtttgatgtttatagtagttccagtgctaccacaatttctgct
gctcaagaaatcactgctgaagaggcaaggagaaaacaagctgatgaacaaataaaagta
ccaactgatcctgatgagggacttatttctctgtccaagatggtcgcagtgctttgtgag
caacatctgtttcttcctttgctcagagcttttgaaatgttccttccatcctgttctctg
ttacctttcatcagatctctccaggcattttctcaaatgagactgttagaggctgcagct
catctagcatccttttcttccagaataaaggaagaacgccatcatatgccgataaacatt
ggaaaagatggaaagatcggaacaacatggttaagctcaactgctgttaaagctgcagat
gcaatgctttcaacaagtccatcagcatatgaaaaaagatgcttgctaaaacttctggct
gaagctgattttggagatgggggatctgctgctgcatgctttcgccgactttattggaaa
attaatttagctgaaccttctctacgcaaaggtgatgaattgtacttggggaatgaaaca
ctggatgatgattcacttttgacagccttagagaaaaatggacactgggaacaagcacgt
aattgggccaggcagttggaatcgagtggtgctccttggaaatcagttgttcatcatgtt
actgagacacaggctgaagccatggtagcagagtggaaggagttcctatgggatgtccca
gaagagagagctgctctgtggggccattgccaaacactattcatcagatattccttccct
gcattacaggctggattgtttttcctcaagcacgcagaagcagtagagaaagacattcca
gcaagagaactgcacgaaatgctcttactttcactccaatggctaagtgggactataacc
caatccagcccagtttaccctttgcatctgctgcgggaaattgagactagagtatggctc
ttagctgtggaatcagaggctcagataaagactgagggagacttgacttcaaccaattat
agccagaatccagtggcaggaaatagcagcagcattatagatcagactgcaattattatc
acaaaaatggataatcatttaaatgcaatgagggccaaagctactgagagaaatgacatg
agggaaattaatcagacacattttcgtcagccgcaagtcctagatggtaactctcccacc
atgtcaggaggtggtacaaagatgaagcggagagcgaaaacctacctgccatcaagacga
tccttagtagatgcagtggatagaactggcgaccttgatgatagttccgcctctcttcat
ttcaagaccaacaatgatttagttagaagtttgcagttgcaagaggaaaatgtcagaata
gaggcatctttgtctggatgggaggaaagagtgggacctgctgaattggaaagagctgtc
ctttctctattggagtttgggcaaataacggctgccaagcagcttcaacagaagctgtct
ccatcgcacatgccatctgaatttgtgcttgtagatgctgctttaaagcttgctgctatt
tcatctcctagtagtagtggagaagcatctacacctatgcttgatcaggaagctctttca
gttattcaatcatacaatatactgagtgacaataacttgactgactcattgcaggacttg
gagatattagcgactaaattcaatgaaggttgtgggcgtggattgtgtaagagaatagta
tcagttgtaaaagctgcaaatgtcttgggcctttcattttctgaggcatttgggaaacgg
ccaattgaactgctacagctgctttcacttaaagctcaagattcacttgagcaagccaaa
ctcctagtacagacacatgtcatgcctctagccagtattgcaagaattcttgctgaatcc
tttctgaagggtctattggctgcacatcgtggaggatatatggattctcaaaaggaagag
gggcctgctcctcttttatggaggttctctgacttcttgaagtgggctgaactttgtccc
tcggaaccagaaattggccatgcactgatgcgcttggttattactggtcaagaaataccg
catgcatgtgaggttgagctcctcattctggcccaccatttctacaaatcttctgcttgc
ctagatggagttgatgttcttgtagccctggcagcaacaagggtagaatcttatgtgtca
gaaggggatttctcatgtttagctcgactggtaactggagtgagcaatttccatgccctg
aattttattctaggcattcttatagaaaatgggcaactggagcttctgcttcacaagtat
tcagctgcagacactgcgacgggtactggtgacggggtcagaggatttcgaatggctgtt
cttacagcgctaaagcatttcaatccacatgatcttgatgcatttgctatggtctataat
cattttgacatgaagcacgatacagcgtcactgctagagtcacgagccactcagtccatg
cagaactggcgcttccgcaatgacaaggagcagaccgaggacctcctggagtccatgcgc
ttcttcatcgaggccgctgaagtgcactcaacgatcgacgccgggaacaagacacgccgt
gcatgtgcacaggcctccctcctatccctccagatccgcatgccggatattgcctggatc
aaactctccgagaccaatgcacggcgtgcactcgtcgagcagtcccgcttccaggaagct
ctcattgttgccgaagcctacggtctcaatcagcccagtgagtgggccctggtactatgg
aaccagatgctcaagccagagctcaccgagcagtttgtggccgagtttgtagccgtgctc
ccactccagccatcaatgcttggggagctggcaaggttctacagggccgaggtagcagca
aggggggaccagtcgcacttctctgtgtggttatcgcctgggggattgcctgcagaatgg
gccaggcacttgggaaggtcatttagaagcctactgaaacgaacaagagatttaaggttg
aggatgcagttggcaacagttgcaacaggattcggagatgtgatcaatgcatgcatgaaa
gcgttggatagggtacccgacaatgctgggccactcattctaaggaaagggcatgggggc
acctacctcccactcatgtga
DBGET
integrated database retrieval system
