Magnolia sinica: 131256004
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Entry
131256004 CDS
T09699
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
msin
Magnolia sinica
Pathway
msin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131256004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msin03019
]
131256004
Messenger RNA biogenesis [BR:
msin03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131256004
mRNA degradation factors
5'-3' decay
Decapping complex
131256004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_2nd
WDR55
Beta-prop_EML_2
Beta-prop_HPS5
EIF3I
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
131256004
NCBI-ProteinID:
XP_058112978
LinkDB
All DBs
Position
9:88526541..88560679
Genome browser
AA seq
1372 aa
AA seq
DB search
MASSAGNPNQQSPYDMQRLFNPSPPNPTNPPSSYALPPSYTTPPPPGPFSYPPPTTPTPP
FHHYLHYPHQDPLANMHQHRPISYPTPSPLTSTPNPNPNPSPGARLMALLTPTPPSNLDP
PPGLTPTAPMLPPVSSAGPLPTPPARVPSSKLPKGRHLIGDRVAYDVDVRLPGEGQPQQL
EVTPITKYVSDPGLVVGRQIAVNRTYICYGLKLGAIRVLNINTALRSLLRGHTQRVTDMA
FFAEDVHLLASASVDGRIFVWKINEGPDEEDKPQITGKAVVAIQILGDGESVHPRICWHS
HKQEVLVIGIGNYVVKIDTTKVGKGKVFSAEEPLKCPVEKLIDGVQLVGKHDGEVTDLSM
CQWMTTRLVSASKDGTVKIWEDRKALPLLTLRPHDGQPVNSVTFLTAPHRPEHIVLITAG
HLNREVKVWASASPEGWLLPSDAESWQCTQTLELRSSAEPRAEEAFFNQVVALPHAGLIL
LANAKKNAIYAIHLDYGPYPSATRMDYITEFTVTMPILSLTGTSDTSSDGEHVVQIYCVQ
TQAIQQYALDLSQCLPPPMENLGNEKDSSISHVFEAPSSSGFNALEPPPGNAPAEMPIGS
SAPKPLVSRSDSAPAARYPIFSGAPELPSIELATSSMESRPSALLPPSTDAENIPVASPP
LPLSPRLSGRLSGIKSPSNGFEPGPPRGDRGADQPVLDYSVDAVLSNMPDVPSSDDSSGK
DETKVGQNDISMVPNPPIMFKHPTHLITPAEILSTAVSSSENTHITHGLKGGEMEVQDVG
VSNDVESVEVEVKVVGESGLGQHEDFDPQREERVLCPEKRERTFYTQASDLNIDMARECS
SLPTEILSMEENHPVEDVGITEDMEQPPNGGEDEVQGSVKDGVPGSVAESATVSAAAQSP
SSAVKGKKPKEKTSQNLGPSSVSPSPFNSTDSSNEPGSSSSGPMEAALCQIMDMQNQMMT
LQKEMLKQMTATVAVPVNKEGRRVETALGRSIEKAVKANTDALWARIQEENAKQKLERDR
IQQIMSSISNWNKDLPALLEKTLKKEISSIGPAVARTITPIIEKIISSAIAESFQRGVGD
KAVGQLEKSVSSKLEATVARQIQAQFQTSGKQALQDTLRSSLESSLIPAFEMSCKAMFEQ
VDAVFQKGMVEHLSAAQQQFEVAHSPLAHALRDAMSSATSLTRTLSSELADGQRKILALM
AAGANQSGINPLAKQQSNGPLAGLHDMVEPPLDPKKELQVLINERKVEEAFTAALQRSDV
SIVSWLCSQVDLAGILSTVPLPLSQGVLLALLQQVACDLANEMPRKLEWMRDVAIAINPV
DPMIAVHVRPIFEQVYQILGHQRTVPTTTAAEANSIRLVMHVINSVLMSSCK
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttcagctggaaaccctaaccagcaatcgccctacgacatgcagaggctcttc
aatccctcacctccaaaccccaccaacccaccttcctcttatgctctacccccttcttat
actacgccccctcccccaggccccttctcctaccctcctcccaccaccccaacccctcct
ttccaccactacctccactacccccaccaagacccccttgctaacatgcaccaacatcgc
cccatctcttatcctacaccctctcccctcacctccaccccaaatcccaaccctaatccc
agcccaggcgcccgtcttatggcccttctaaccccaacccctccttccaatctcgacccc
ccaccaggcctcaccccgacggccccgatgctcccgcccgtcagctccgcgggcccgctg
cccacaccgcctgcccgggtcccgagcagcaagctgcccaaagggcggcatttgatcggc
gaccgggttgcttatgacgtggatgttcggttgcccggggagggccagccacagcagctc
gaggtcacaccaatcaccaagtacgtgtcagatcctgggctcgtcgttggccggcagatc
gcggtgaaccggacatatatatgctatgggttgaagctgggggcgatccgggtgctgaat
ataaacaccgcgctgcgatctttgctccgaggtcacacccagagggtcactgacatggct
ttctttgctgaggatgttcaccttttggctagtgcgagtgtggatgggaggatttttgtg
tggaagattaatgaaggccctgatgaagaagataagccacagataacaggaaaagctgtt
gttgccattcagatacttggagatggggaatcagttcatccacgaatctgttggcactca
cacaaacaggaagttttggttattgggattgggaactatgtggtgaaaatcgatacaaca
aaagtcggaaaaggcaaagtgttttctgcagaggaacctctcaaatgccctgttgagaag
ctgattgatggagtccaattggttggcaaacatgatggtgaagtgacagatctatcgatg
tgtcaatggatgactacgcggctagtttctgcatcaaaagatggcacggtaaagatttgg
gaagaccggaaggcattgccacttttaacattgaggccacacgatggccaacctgttaac
tcagttacattcttgacagcgcctcatcgccctgaacacattgttcttatcacagcgggc
catctaaatcgagaagtgaaggtgtgggcatccgctagcccagaaggctggttattgccc
agcgatgctgaatcttggcagtgcacccagaccttggaattgagaagttctgctgaacct
cgagctgaagaggcatttttcaatcaagttgttgcattgccacatgcaggccttattttg
cttgccaatgccaagaagaatgctatatatgccatacatttagactatggtccatatcca
tcagctacacgcatggactatataactgaatttaccgtcacgatgcctattttgagtctt
acaggaacaagtgacacctcatctgatggggaacatgttgttcagatttattgtgtgcag
acgcaggctattcaacagtatgctttggatttatctcagtgcttgccgccaccaatggag
aatttgggcaacgagaaggattccagcatctctcatgtttttgaggcgcccagttctagt
gggttcaatgcattggagccacctcctggaaatgcgccagctgagatgcccattggaagt
agcgcgccaaaaccacttgtaagcagatctgatagtgcaccggcagctagatatcctata
ttttcaggcgctcctgagcttcctagcatcgaattggctacttcaagcatggaatctaga
ccaagtgctttgttgcctcccagtactgatgctgaaaacattcctgttgcgtctccccct
cttcctttgagtccaaggttgtctggaagactctctggtataaagagcccatcaaacggc
ttcgagccaggtcccccacgtggtgatcgtggtgctgaccagccagttcttgattattca
gttgatgctgttctttcaaacatgcctgatgttccttcctcagatgacagttctggaaag
gatgaaactaaagttgggcaaaatgatatttctatggtgccgaatcctcctatcatgttc
aagcacccgacccacctgataactccggcagaaatattgtcaacggctgtttcttcctct
gagaacactcatataacacatggcctgaaagggggagaaatggaggttcaagatgtgggt
gttagcaatgatgtagagagtgtagaggtggaagttaaagttgtgggtgagagtggattg
ggtcagcatgaggactttgatcctcagagagaagagcgtgttctttgcccagagaaaaga
gaaagaaccttttacacccaggcttcagatcttaacattgatatggccagagagtgcagt
tcattacccacagaaattctgagcatggaggagaatcacccagtcgaagatgtaggtatt
actgaggatatggagcagcctccaaatggaggtgaggatgaggttcaaggttctgtgaag
gatggtgtgcctggatcggttgctgagtctgctactgtatcagcagctgcccagtcgccc
tcatcagctgtgaaaggaaagaaaccaaaagaaaaaacctctcaaaatttgggcccatct
tcagtttctccgagccctttcaactctactgattcttctaatgaaccaggtagcagctca
agtggtcctatggaagctgccttgtgtcagattatggatatgcagaaccagatgatgacc
cttcaaaaggaaatgctgaagcagatgactgcgacagtggcagtccctgttaacaaagaa
ggcagaagagtagagacagctcttggccggtccattgaaaaagctgtcaaggcaaacacc
gatgctttgtgggcccgtatccaagaggagaatgcaaaacagaagttagaaagggaccgt
atacagcagataatgagctcaatctcgaactggaacaaggacttaccagccttattagag
aagacgttgaagaaagaaatatcttcaatagggccagcagttgctcgcacaattaccccc
atcatagagaagatcatttcttctgctattgctgaatcatttcagagaggggtgggagac
aaggcagtgggtcagctggagaagtcagtctcttcgaagcttgaagctacagtagctcgg
caaattcaagcacagtttcaaacttctggcaaacaagcccttcaggacactttaaggtca
agcctagaatcttcattgattcctgcatttgagatgtcatgtaaggcaatgtttgagcaa
gttgatgctgtctttcagaaaggcatggttgaacatctgtctgctgctcagcagcagttt
gaggttgcacattctccgctggcacatgcattaagggatgcaatgagttccgcgacatcg
ctcactcgaaccttatctagtgaattggctgatggccagcgcaagatcttagctctcatg
gctgctggagcaaaccaaagtggaataaatcccttggctaaacaacaaagcaatggacct
ttggctggtctccatgacatggttgaaccacctttggatccaaagaaagagctacaagta
ttgataaatgaacgaaaagttgaggaagcattcaccgcagcccttcaaagaagcgatgtc
tcgattgtatcgtggttatgttctcaggttgatttagcaggaattttatccacggttcct
ctccctcttagccaaggagttctccttgctcttctccagcaggtcgcctgcgatcttgcc
aacgagatgccccggaagctggagtggatgagggatgtagctattgccattaatccggtg
gacccaatgatcgcggtgcatgtccggcccatctttgagcaggtttatcagatactaggc
caccagcggacggtccccaccaccacggcagcggaagcaaacagcatccgcctagtcatg
catgtcatcaattccgtattgatgagcagttgtaaatga
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integrated database retrieval system
