Magnolia sinica: 131257853
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Entry
131257853 CDS
T09699
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
msin
Magnolia sinica
Pathway
msin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131257853
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msin03019
]
131257853
Messenger RNA biogenesis [BR:
msin03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131257853
mRNA degradation factors
5'-3' decay
Decapping complex
131257853
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
WDR55
Beta-prop_HPS5
Beta-prop_EML_2
Motif
Other DBs
NCBI-GeneID:
131257853
NCBI-ProteinID:
XP_058114749
LinkDB
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Position
10:complement(6261155..6287180)
Genome browser
AA seq
1163 aa
AA seq
DB search
MADAAMLPSASVRVPSRKLPKGRHLVGKRVAYDVDVRLPGELQPQLEAMPFMMYESDPGL
VLGRKIAVNRTYICYGLKTGEIMVRNINNALRSFLKGHTQRVIDMAFFGEDVHLLASSSI
DGRIIVWKINEGPDENDKPQITGKVVVAIHMVGDLESFHPPVCWHSHYQEILVVAIGNRV
LKIDTTKVENGGAFSAEQPITCPVEKLINGVQLVGKHKGDVTDLSICHWITSRLVSASTD
GLVKIWEDWMAVPLGTLRPHVGQPVNSVNFLTAPHCPNHIVLITAGHLNREVKMWASAGI
EGWLIPRDFKSWRCIQTLDLKSSAESQAEEAFFNQVVVLPDTGLVLLANAKKNAIYVVHV
EYGPHPTATRMDYIAEFTVTMPILSLTGRSDCSSDGEHVVEVYCVQTQAIQQYTLDLSQC
LPPPLKNAEIDRVSGSGFSALDPSCRNVSTEMPVGSATSKTPQSSAAAKYSVFSETQELP
RLELATSSVEPSPIGDRCVDTLVIDYSVDRRVEVGHMKLTDDSSLDETKVGKNDIYMVPN
PPTSFKVGEIFSKAVPSSESTLVGQGSKVGEKKVQDVAVNNEVREVGQYGLNQLQELDSQ
REERSLRTEEKEKSFYTQVLDLLSETSSDGGSLSKEISGMEETHRIEDVGDGELLEWPWN
AGEQGVQDSSKDVPNTESSMAIVATELPSSFTRKKKVKQPSQVTGPSSPSVNPFKSADSS
NEPGSSSGGPSIEAIFTQILALQESMKELMTIQKEMQEQMTALVTVPVNKEGSRVEAALS
LSMEKSLKSNCDALWNRIQEENKKQKLERDRIKQITGSISGSMNTKWPAMFKKTLKQEIA
AIGPAGSRAITPILEKTVSSAIADSFQRGVGNNAVNQLEKSINSNLEATVTRQIQAQFQT
SGKQVFQDAIRASLASSVIPAFEQACKIMFEQVDAAFQKTMVEQTSAAQQQFESTNSPLA
LALRDAMNSASSIAQTLSGELAVSQRKLLAFVAAGANEKAMNPLATQQSDGPLGGLHDIV
EAPLDPKKELERLISEHKYGEAFTSALQRSDVTIVSWLCSQVDLQAILSVLPLPLSQGVL
LSLLQQLACDIGNKTSQKLDWMGDVVVAIDPVDPTIAAHGRPIFEQVHQILDHQRVLPTT
TTAERSCIRLIMRAINSVLKTCK
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgctgcaatgctcccgtcggcgtcggtgcgggtgccaagcagaaagttgcct
aaggggcggcacctggttggtaaacgggtcgcgtatgatgtcgatgtgcggttgcccggg
gagctgcagccgcagcttgaggccatgccgttcatgatgtatgagtcggatcctggatta
gttcttggacggaagattgcggtgaaccggacttatatttgctacggactgaagacgggt
gagattatggtgcggaatataaacaatgcactgagatctttccttaaaggtcatacccag
agggtcattgacatggctttcttcggtgaggatgttcaccttttggccagttcgagcata
gatggaaggatcattgtgtggaagattaatgaaggccctgatgagaatgataagccacag
ataactggaaaagtcgttgtcgcgattcatatggtgggagatttggaatcatttcatcca
cccgtatgttggcactctcactatcaagaaattttggttgttgcgattggaaatcgtgtt
ctgaagattgatacaacaaaagtggagaatggtggagcattctcggcagagcaacctatc
acatgtcctgttgagaagctgatcaatggagtccaactcgttggtaaacataagggggat
gtgactgacttatcgatatgtcattggataacttctcgcctagtatctgcatcaacagat
ggcttggtaaagatctgggaggactggatggcagtgccccttgggacgctgaggccacat
gttggccaacctgttaactcagttaatttcctgacagcacctcattgccctaaccacatt
gttcttataactgcgggtcatctgaatcgagaagtgaagatgtgggcctcagcaggcatc
gaagggtggcttattcctagagattttaaatcatggcgctgcattcagaccttggacttg
aagagttccgccgaatctcaagctgaagaggcttttttcaaccaagtagtggtgttgcca
gacacaggcctcgttttacttgcaaatgccaagaaaaatgctatatatgtggtgcatgta
gaatatgggccacatccgacagcaacacgcatggattatattgccgagtttactgtcaca
atgcctatattgagtctaacaggaagaagtgactgttcatcagatggggaacatgttgtt
gaggtttactgcgttcagacacaggctatccaacaatataccttggatttatctcagtgc
ctgccaccaccactgaagaatgctgaaattgatagggtttctggtagtggtttttctgca
ttagacccatcttgcagaaatgtctcaactgagatgcctgttggaagtgctacatcaaag
acacctcagagttcagctgcagctaaatattctgtattttcagagactcaagagcttcct
agacttgaattggctacttcaagtgttgaacctagcccaattggtgatcgttgtgttgat
acactagttattgattattcagttgataggagagtggaagtaggtcatatgaagttgact
gatgattcttccttagatgaaactaaagttgggaaaaatgatatttatatggtgccaaat
cctccaacctctttcaaagtgggagaaatcttttcgaaggccgttccttcttctgagagt
actcttgttggccagggctcgaaagtgggagaaaagaaggttcaagatgttgctgtaaac
aatgaggttagagaggtgggtcagtatggattgaatcagctgcaggagttagattctcaa
agagaagagcgtagtcttcgcacggaggaaaaagaaaaatccttctatacccaagtcttg
gatcttctcagtgagacgtccagcgatggcggttcattgtctaaagaaatttcaggcatg
gaggaaactcatcggatcgaagatgttggagatggtgagttacttgagtggccttggaat
gctggtgagcaaggcgttcaggactcgagtaaggatgtacctaataccgaatcgagtatg
gcaattgtagctactgagttgccttcatcatttacgaggaaaaagaaagtgaaacaaccc
tctcaagtgacgggtccatcttccccttccgttaaccctttcaagtctgcagattcttca
aatgaaccaggtagcagcagtggcggcccttccatagaggccatttttacacaaattcta
gcacttcaggagagtatgaaagagcttatgaccattcaaaaggaaatgcaagagcaaatg
acagctctggtgactgttcctgttaacaaagaaggtagcagagttgaggcagccctcagc
ctgagcatggagaaatccctcaagtcgaactgtgatgctctgtggaaccgcatccaagag
gagaacaagaaacagaagttagaacgggatcgcataaagcagataacaggttcaatctcg
ggctctatgaacacgaagtggccagccatgttcaagaagacattgaagcaagaaattgct
gcaataggaccagcaggttctcgcgcaattacaccgattttggagaagactgtttcttca
gctattgctgattcgtttcagagaggggttggaaacaacgcagtgaatcagttggagaaa
tccatcaactcgaaccttgaagcgacagtgaccaggcaaattcaagcacaattccaaaca
tctgggaagcaagtttttcaggatgcaatcagggctagcttggcatcttctgttattcct
gcatttgagcaggcatgcaaaataatgtttgagcaagttgatgctgcatttcagaagacg
atggttgaacagactagtgctgcacaacagcagtttgaatccacaaattctccattagca
cttgctttgagggatgcaatgaactctgcatcatccatcgcccaaaccttaagtggtgaa
cttgctgttagccagcgtaagctcttagcttttgttgcagctggagcaaatgagaaagcg
atgaatcccctggctacacaacaaagtgatggacctttgggtgggctacacgacattgtt
gaggcacctttggatccaaagaaggagctggaaagattaatatctgaacacaagtatggg
gaagcattcacttcagcccttcaaagaagtgatgtcaccattgtgtcctggttatgttct
caggttgatttgcaagcaattctatcagttcttcctcttcctctgagtcaaggagtcctg
ctatcccttctccaacagctagcatgcgatattggaaacaagacctcccagaagctagat
tggatgggagatgttgttgttgctatagatccggtggacccaacaattgcggcgcatggg
cggccgatatttgaacaggttcatcagatattggaccaccagcgggtgctcccgaccacc
accacagctgaaagaagctgcatccgcctcataatgcgtgcaatcaattcagtattgaag
acctgcaaatga
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