Magnolia sinica: 131257857
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Entry
131257857 CDS
T09699
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
msin
Magnolia sinica
Pathway
msin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131257857
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msin03019
]
131257857
Messenger RNA biogenesis [BR:
msin03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131257857
mRNA degradation factors
5'-3' decay
Decapping complex
131257857
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
WDR55
WD40_MABP1-WDR62_2nd
Sey1_3HB
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_EML_2
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_TEP1_C
Motif
Other DBs
NCBI-GeneID:
131257857
NCBI-ProteinID:
XP_058114757
LinkDB
All DBs
Position
10:complement(6418683..6445495)
Genome browser
AA seq
1368 aa
AA seq
DB search
MSETSVATAETAMLPSASVQLPKGRQLVGDRVTYDVNVGLPGELQPQLEAMAIELHELDP
GLVLGRKIAVNRTYICYGLKPGAIRVLNINTGRISLLKGHTQSVTDMAFFSEDVHLLASS
SIDGRIFVWKINEGPDENDKQLITGKVVVAIHMVGDGESFHPHICWHPITQEILVVTIGN
RILKIDITKVGKDEVFTAEKPIKCPVEKLIDGIQLVGKHEGEVTDLSMCHWMITRLVSAS
TDGMVKIWADEKAVPLVTLRPHNGEPVNSVTFLIAPCHPDHIVLITAGHLNQEVKVWASA
GKEGWLLPSDCKSWQCIQTLDLKSSTEPRPEEAFFNHVVVLPDSGLLLHANAKKNAIYAV
HVEYGRYPTATRMDYITEFTVTMPILSLTGRSDYSPDGKHVEVYCIQTQAIQQYTLDLSK
CLPPPLKNAGIEKVSGSDFAALDPCCGNVPAEMPVGSGSAAAKYPVFSGNLELPIVELAT
SSFEPKPSAMPPQSLRLSGRLSFRNPSNNFEPGPTLCNRCVDQPVLDYSVDRRVDVGCMK
LTDVPSLDDSSVKDGIEVGKNDISMVPNPPITFKVGEIPLKVVSSSESSLVGQGSKVGEE
KVQDIAVSNDIKSGEVEVKEVGQQRELDSEREKHILHTGKKEKSFYTQASDLGIEMAKES
CSLSTEISGMEETCQVKDVGVAELSDWPSNAGELGIQDLSKDVPNTKSSMATVFSQSPSL
AGKVWKKKVNPSQVAGPSSPSISPFKFAESSNEPEETCQVKDVGVAELLDWPSNAGELGI
QDLSKDVPNTKSSMATVFSQSPSSAGKMWKRKVNPSQVAGPSSCSTSPFKFAESSNEPEE
TCQVKDVGVAELLDWPSNAGELGIQDLSKDVPNTKSSMATVFSQSPSSAGKMWKRKVNPS
QVAGPSSCSTSPFKFAESSNEPGSSNGSPSMETIFTQILALQESVKELMTIQKEIQKQMT
ALLAVLVNKEGSRIEAALSESMEKALKSNSDALWECIQEENKKQKLERDRIKQIVSSISG
SMNTKWPAMSKKTLKQEIAAIGPAVSRAITPILENTVSSAIADSFQRGVGNKAANQLENS
LNSKLEVTVARQIQVQFQTSGKQDFQDALRASLESSVIPAFEQACKAMFEQVDATFQKGM
AEHTTAAQQQFESTHSPLAIALRDAMSSASSITQTLSGELANGQRNLLAFMAAGANQKTT
NPLATQQNDGPLGVQHDMAMTMQQVEAPLDPKKELERLISEHKYEEAFTSALQRSNITIV
SWLCSQVDLQGILAVFPLPLSQGVLLSLLQQLACNIGNETSKKLDWMRDILAAIDPVDPM
ITVHGRPIFEQVYQILDYQKALPTTTVTETNSIRLLMHVINSVLMNYK
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaacgagtgtagcaacagctgagactgcaatgctcccatcagcgtcggtgcag
ctgccaaaggggcggcaactggtcggtgaccgggtcacgtacgatgtcaatgtgggattg
cctggggagctgcagccacagctcgaggccatggcgatcgagctacatgagttggatcct
ggattagttcttggacggaagattgcggtgaaccggacttatatttgctacggactgaag
ccgggtgcgattcgggtgctgaatataaacactggacggatatctttgcttaaaggtcat
actcagagtgtcactgacatggctttcttcagtgaggatgttcaccttttggccagttca
agcatagatggaaggatctttgtgtggaagattaatgaaggtcctgatgagaatgataag
caactgataactggaaaagtcgttgtcgccattcatatggtgggagatggggaatcattt
catccacacatatgttggcaccctatcactcaagaaattttggttgttacgattggaaat
cgtattttgaaaattgatataacaaaagtggggaaagatgaagtgtttacggcagagaaa
cctatcaagtgccctgttgagaagctgattgatggaatccaacttgttggtaaacatgag
ggggaagtgactgacttgtcgatgtgtcattggatgattactcgcctagtatctgcatca
acagatggcatggtaaagatctgggcagatgagaaggcagtgccccttgtaacgctgagg
ccacacaatggcgaacctgttaactcagttactttcctgatagcaccttgtcaccctgac
cacattgttcttataacagcgggtcatctgaatcaagaagtgaaggtatgggcctcagca
ggcaaagaagggtggttattgcctagtgattgtaaatcatggcagtgcattcagaccttg
gacttgaagagttccactgaacctcgacctgaagaggcttttttcaaccacgtagtggtg
ttgccagattcaggccttcttttacatgcaaatgccaagaaaaatgctatatatgcggtg
catgtagaatatgggcgatatccaacagcaacacgcatggattatattactgagtttact
gtcacaatgcctattttgagtctaacaggaagaagtgactattcaccagatgggaaacat
gttgaggtttactgcattcagacacaggctattcaacagtataccttggatttatctaag
tgcctaccaccaccactgaagaatgctggaattgagaaggtttctggtagtgattttgct
gcattagacccatgttgcggaaatgtcccagctgagatgcctgttggaagtggttcagct
gctgctaagtatcctgtattttcggggaacctggaacttcccatagttgaattggctact
tcaagttttgaacctaaaccaagtgctatgccacctcagagtctgaggctgtcaggaaga
ctatcttttaggaacccatcaaataactttgagccaggtcccacactttgcaatcgttgt
gttgatcaaccagttcttgattattcagttgataggagagtggatgttggttgtatgaag
ttgactgatgttccttccttagatgacagctctgtgaaggatggaattgaagttgggaaa
aatgatatttctatggtaccaaatcctccaatcacattcaaagtgggtgaaataccattg
aaggttgtttcttcttctgagagtagtcttgttgggcagggatcgaaagtgggagaagaa
aaggttcaagatattgctgtaagcaatgatattaagagtggagaagtggaggttaaagag
gtgggtcagcagcgggagttagattctgagagagaaaagcatattctacacacagggaag
aaagaaaaatccttctatacccaagcatcggatcttgggattgagatggccaaagaaagc
tgttcattgtctacagaaatttcaggcatggaagaaacttgtcaggttaaagatgttggt
gttgctgagttatcggactggccttcaaatgctggtgaactaggcattcaggacttgagt
aaggatgtgcctaatactaaatcgagtatggcaactgtattttctcagtcaccttcatta
gctggaaaagtgtggaaaaagaaagtaaatccctctcaagtggcaggtccatcttcccct
tccattagccctttcaaatttgcagaatcttcaaatgaaccagaagaaacttgtcaggtc
aaagatgttggtgttgctgaattattggactggccttcaaatgctggtgaactaggcatt
caggacttaagtaaggatgtgcctaatactaaatcgagtatggcaactgtattttctcag
tcaccttcatcagctggaaaaatgtggaaaaggaaagtaaatccctctcaagtggcaggt
ccatcttcctgttccactagccctttcaaatttgcagaatcttcaaatgaaccagaagaa
acttgtcaggtcaaagatgttggtgttgctgaattattggactggccttcaaatgctggt
gaactaggcattcaggacttaagtaaggatgtgcctaatactaaatcgagtatggcaact
gtattttctcagtcaccttcatcagctggaaaaatgtggaaaaggaaagtaaatccctct
caagtggcaggtccatcttcctgttccactagccctttcaaatttgcagaatcttcaaat
gaaccaggtagcagcaacggcagtccttccatggagaccatttttacccaaattctggca
cttcaggagagtgtgaaagagcttatgaccattcaaaaggaaatacagaagcaaatgacg
gctctactggctgttcttgttaacaaagaaggtagcagaatagaggcggccctcagcgag
agcatggagaaagctctgaagtcgaactctgatgctctgtgggaatgcatccaagaggag
aacaagaaacagaagttagaacgcgatcgcataaagcagatagtgagttcgatctcgggc
tctatgaacacgaagtggccagccatgtccaagaagacattaaagcaagaaattgctgca
ataggaccagcagtatctcgcgcaattaccccgattttggagaacactgtttcttcagct
attgctgattcatttcagagaggggttggaaacaaggcagcgaatcagttggagaactca
ctcaactcgaaactcgaagtgacagtggccagacaaattcaagtacaattccaaacatct
gggaagcaagattttcaggatgcactaagggctagcttggaatcttcggtgattcctgca
tttgagcaggcatgcaaagcaatgtttgagcaagttgatgctacatttcagaaggggatg
gctgaacacactactgctgcacaacagcagtttgaatccacacattctccgttagcaatt
gctctgagggatgcaatgagctctgcatcatccatcacccaaaccttaagtggtgaacta
gccaatggccagcgcaatctcttagctttcatggcagctggagcaaatcagaaaacgacg
aatccattggctacacaacaaaacgatggacctttaggtgtgcaacatgacatggccatg
actatgcaacaggttgaggcacctttggatccaaagaaagagctggaaagattaatatct
gaacataagtatgaggaagcattcacttcagcccttcaaagaagcaacatcaccattgtt
tcctggttatgttctcaggttgatttgcaagggatactagcagtttttcctcttcctctg
agtcaaggagtcctgctatcccttctccagcagctagcatgcaatattggaaatgagacc
tccaagaagctagattggatgagagacattcttgctgctatagatccagtggacccaatg
attacagtgcatgggcggccgatatttgaacaggtttatcagatattggactaccagaag
gcactcccaaccaccacagtaactgaaacaaacagcatccgcctcctcatgcatgtaatc
aattcagtattgatgaactacaaataa
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integrated database retrieval system
