Magnolia sinica: 131257858
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Entry
131257858 CDS
T09699
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
msin
Magnolia sinica
Pathway
msin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131257858
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msin03019
]
131257858
Messenger RNA biogenesis [BR:
msin03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131257858
mRNA degradation factors
5'-3' decay
Decapping complex
131257858
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
WDR55
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_HPS5
Beta-prop_RIG_2nd
Beta-prop_EML_2
Motif
Other DBs
NCBI-GeneID:
131257858
NCBI-ProteinID:
XP_058114760
LinkDB
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Position
10:complement(6481418..6501203)
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AA seq
1228 aa
AA seq
DB search
MRAFYKRMMNWSSSNPESKRGEVFVDSVGSEMSVETAEAAMLPSASVQAPGSKLPKGRHL
VGDRVVYDIDVRLPGELQPQLEAMPFAMCESDSGLVLGRKIAVNRTYICYGLKPGSIRVL
NINNALRCLLNGHTQRVTDMAFFAEDVHLLASSSINGRIFVWKINEGPDENDKPQITGKV
VIAIHMVADGESFHPRICWHPINQEILVVAVGNRVLKMDTTKVRKGEAFLAEQPIKCPVE
KLIDGVQLVGNHEGEVTDLSMCQWMTTRLVSASTDGTVKIWEDWMAVPLVTLRPHDGQPV
TSVNFLTAPHCPDHIVLETAGHLNRQVKVWASAGSEGWFFPSASVPWQCIQTLDLKSSAE
TRAEEAFFNQVVVLPHQGLVLLANAKKNAIYAVHVEYGPYPTATRMDYIVEFTVTMPILS
LTGRSDYSPDGEHVVEVYCVQTQAMQQYTLNLSQCLPPPLKNAEIQKVSGSDFAAFDPFC
GNVPTEMPVESVSAAAEYPVFSGTLELPRLELATTSVEPNPSALPPLSPRLSGRQSFRNP
SNNFEQGPAPCDRCVDPPVLDCSVDRRVDVGCMKLTDVPPFDDSSVMDKTEVGRNDISMV
PNPPITFKVGEILLKAVSPSESSLVVQGTKVGKKKVQDVAEINDIESVEVEVKEVDQLQE
LDSQREKHILHVEKKEKSFYTQALDLGIEMARDGCSLSTEISGMEETCQIQDVGVAELLE
WPWNAGQQGIRDLSKDVPEIESSAATVVAQPPSSAGKRRKKKVKPSQVVNPSSPSTSPTK
SADSSNEPGSSNGSPSLETILTQILALQESMKELMTTQKEIQKQMMALVAVPVEKEGSRV
EAALSQSMEKAFKSNCDALWDRIQEENKKQKLERDRLLQTTSSISGSMNTKWPAMFKETV
KKEIAAIGPAGAHAITPILEKTVSSALADSFQRGVGNKAVNQWENSVNSKLEATVARQIQ
AQFQTSAKQAFQDALRASLASSVIPAFEQACKAMFEQVDAAFQKRMVQQTSAAQQQFESI
HSPLALALRDAMSSASSITQTLSGELADGQRNLLAFMAAGANQKAMNPLATKQSDGSLGG
LHDVVEAPLDPKKELARLISEHKYGEAFTSALQRSDVTIVSWLCSQVDLRGILSVPPLPL
SQGVLLSLFHQLACNIGNETSLKLDWMRDVLVVIDPVDPTIAVHGQPIFEQVYQILYHQR
LLLTTTAAEKSSISLVMHLINSVLMSYK
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atgcgagcgttctataagaggatgatgaattggagttcttccaatccggaatctaaaaga
ggagaggttttcgtggattctgtaggaagtgaaatgagtgtagaaacagctgaggctgca
atgctcccatcggcgtcggtgcaggcgccaggcagcaagctgcctaaggggcggcacttg
gtcggtgaccgggtcgtatatgatatcgatgtgcgattgcccggggaactgcagccacag
cttgaggccatgccgttcgcgatgtgtgagtcggattctggattagttcttggacggaag
attgcggtgaaccggacttatatttgttacggactgaagccgggttcaattcgggtgctg
aatataaacaatgcactgagatgtttgcttaatggtcatacccagagggtcactgacatg
gctttcttcgccgaggatgttcaccttttggccagttcaagcataaatggaaggatcttt
gtgtggaagattaatgaaggtcctgatgagaatgataagccacagataactggaaaagtc
gttatcgccattcatatggtggcagatggggaatcatttcatccacgcatatgttggcac
cctatcaatcaagaaattttggttgttgcggttggaaatcgtgttctgaaaatggataca
acaaaagtcaggaaaggtgaagcatttttggcagagcaacctatcaagtgccctgttgag
aagctgatcgatggtgtccaacttgttggtaatcatgagggggaagtgactgacttatca
atgtgtcagtggatgactactcgcctagtgtctgcatcaacagatggcacggtaaagatt
tgggaggactggatggctgtgccccttgtgacactgagaccacacgatggccaacctgtt
acctcagttaatttcctgacagcacctcattgccctgatcacattgttcttgaaacagcg
ggtcatctgaaccgacaagtgaaggtgtgggcctcagcaggcagtgaagggtggtttttt
cctagtgcttctgtgccatggcagtgcattcagaccttggacttgaagagttctgccgaa
actcgagctgaagaggcttttttcaaccaagtagtggtgttgccacaccagggccttgtt
ttacttgcaaatgccaagaaaaatgctatatatgcggtgcatgtagaatatgggccatat
ccgaccgcgacacgcatggattatattgtggagtttactgtcacaatgcctattttgagt
ctaacaggaagaagtgactattcaccagatggggaacatgttgttgaggtttactgtgtt
cagacacaggctatgcaacagtataccttgaatttatctcagtgcctgccaccaccactg
aagaatgctgaaattcagaaggtttctggtagtgattttgcggcatttgacccattttgc
ggaaatgtcccaactgagatgcctgttgaaagtgtttcagctgcagctgagtatcctgta
ttttcagggaccctagagcttcccagacttgaattggctactacaagtgttgaacctaac
ccaagtgctttgccacctctgagtccgaggttgtcaggaagacaatcttttaggaaccca
tcaaataactttgagcaaggtcccgcaccttgcgatcgttgtgttgatccaccagttctt
gattgttcagttgataggagagtggatgttggttgtatgaagttgactgatgttcctccc
tttgatgacagctctgtgatggataaaactgaagttgggcgaaatgacatttctatggta
ccaaatcctccaatcactttcaaagtgggagaaatactattgaaggcagtttctccttct
gagagtagtcttgttgtccagggcacgaaagtgggaaaaaaaaaggttcaagatgttgct
gaaatcaatgatattgagagtgtagaggtggaggttaaagaggtggatcagctgcaggag
ttagattctcagagagaaaagcatattcttcatgtggagaaaaaagaaaaatcattctat
acccaagcactggatcttggcattgagatggccagagatggctgttcattgtctacagaa
atttcgggcatggaggaaacttgtcagattcaggatgttggcgttgctgagttgcttgag
tggccttggaatgctggtcaacaaggcattcgggacttgagtaaggatgtacctgaaatt
gaatcaagtgcagcaacggtagttgctcagccgccttcatcagcaggaaaaaggaggaaa
aagaaagtaaaaccctcccaagtggtcaatccatcttcaccttccactagccctaccaag
tctgcagattcttcaaatgaaccaggtagcagcaatggcagtccttccttagagaccatt
ttgactcaaattctggcacttcaggagagtatgaaagagcttatgaccactcaaaaggag
atacagaagcaaatgatggctttggtggctgttcctgttgaaaaagaaggtagcagagta
gaggcggccctcagccagagcatggagaaagctttcaagtcgaactgtgatgctctgtgg
gaccgcatccaagaggagaacaagaaacagaagttagagcgggatcgcttactgcagaca
acgagttcaatctcgggctctatgaacacgaaatggccagctatgttcaaggagacagtg
aagaaagaaattgctgcaataggaccagcgggagctcacgcaattaccccaattttggag
aagaccgtttcttcagctcttgctgattcatttcagagaggggttggaaacaaggcagtg
aatcagtgggagaactcagtcaactcgaaacttgaagcgacagtggctagacaaattcaa
gcacaattccaaacatctgcaaagcaagcttttcaggatgcactaagggctagcttggca
tcttcagttattcctgcatttgagcaggcatgcaaagcaatgtttgagcaagttgatgct
gcatttcagaagaggatggttcaacagactagcgctgcacaacagcagtttgaatccata
cattctccattagcacttgctttgagggatgcaatgagctctgcatcatcaatcacacaa
accttaagtggtgaactagctgatggccagcgtaatctcttagctttcatggcagctgga
gcaaatcagaaagcgatgaatcccttggctacaaaacaaagcgatggatctttgggtggg
ctacatgacgtggttgaggcacctttggatccaaagaaagagctggcaagattaatatct
gaacataagtatggggaagcattcacttcagcccttcaaagaagcgatgtcaccattgtg
tcctggttatgttctcaggttgatttgcgagggattctatcggttcctcctcttcctctg
agtcaaggagtcctgctatcccttttccaccagctagcatgcaatattggaaatgagacc
tccctgaagctagattggatgagagacgttcttgttgtgatagatccagtggacccaacg
attgcggtgcatggccagcctatatttgaacaggtttatcagatactgtaccaccagcgg
ttgctcctgaccaccacagcagctgaaaaaagcagcatctccctcgtcatgcatctaatc
aattcagtattgatgagctacaaatga
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