Magnolia sinica: 131257866
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Entry
131257866 CDS
T09699
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1 isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
msin
Magnolia sinica
Pathway
msin03022
Basal transcription factors
msin03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
131257866
09124 Replication and repair
03420 Nucleotide excision repair
131257866
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msin03021
]
131257866
03400 DNA repair and recombination proteins [BR:
msin03400
]
131257866
Transcription machinery [BR:
msin03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
131257866
DNA repair and recombination proteins [BR:
msin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
131257866
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
SAB
EF-hand_2
Motif
Other DBs
NCBI-GeneID:
131257866
NCBI-ProteinID:
XP_058114767
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Position
10:complement(6583076..6604749)
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AA seq
608 aa
AA seq
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MASAVNMRAKYKTSVKDPGIPGVLKMTEEKFIFTPNDPRSPIKLDVSFQFIKGHKFSKEG
SKQALLNLTQEVGGYIFEFDKFPDRDICRDFVGKILGKLQANPPSSRQDTQVVSEKPSVP
GHDEQLSTAEMERRMKLLREDSELQKLHKQFVIGGVLTEAEFWATRKNLLDADAHRTSKQ
QVGFKSAMLADVRPLTDGRTNKVTFSLTPEIIHQIFAERPAVHQAFLNFVPSKMTEKDFW
TKYCRAEYLHRTRNSVAAAAEAAEDEELAVFLKHDDILANEARRKIRRVDPTLDMEADLG
DDYLHLPDHGILRDGIKETAEAESELSKRTLLQDINRHAAVVLEGRTLDVELGDTRTVAE
ALARSKQAELATETSDENTNQERLERVFRMTEIDDLQAPRDLPLAQLCIKDPREYFDSQQ
ANALKALGNAGAGTRPINCSLSAEEAYSSLREQISEMRAVGLSDPVVKPEEALKVSNVLT
QQLSSSTHYNLGKNPQESVLDRLPGKTKDELLHHWTSIQELLRHFWSSYPITTSYLYLKV
SRLKDAMMQIYPKLQETKESVQSDFRHQVSLLVQPMLQVLGKAHHVSRNIQTCSQQVLPL
LVTVFICS
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atggcatcggccgttaacatgcgcgccaaatacaagacctccgtcaaagaccctgggatt
cccggagttctcaaaatgacagaagaaaaatttattttcactcccaatgatcccaggtca
cccatcaagcttgatgtgagttttcaattcattaaaggtcacaaattcagcaaagaggga
tccaaacaagcactcttaaatcttacacaagaggttggaggttacattttcgagtttgac
aagtttcctgatcgtgacatttgtcgagattttgtaggtaaaatccttgggaagctccag
gctaatccaccatcatccagacaggatactcaagtggtttctgagaaaccttccgttcca
ggtcatgatgaacaactcagcacagcagagatggagcgccggatgaagctgctccgagag
gatagtgaattgcagaaactgcacaagcaatttgtcatcggtggtgtgttgacggaagct
gagttttgggccacaagaaagaatttgcttgatgctgatgcccatagaacgtcaaagcaa
caagtgggtttcaaaagtgctatgcttgctgatgtcaggccattgactgatggtcggacc
aataaagtcacattcagcttgactccagagatcattcatcagatttttgcagaacgacca
gctgtgcatcaggcatttctgaactttgttcctagtaagatgacagaaaaagatttctgg
acaaaatattgtagagcagagtacctccacaggacaagaaattctgtggcagctgcagca
gaagcagctgaagatgaggagcttgctgttttcttaaagcatgatgatattttggccaat
gaagctcgtcgcaagatcagacgagtcgatccaactctagacatggaggctgatcttggg
gatgattacctccatcttccggatcatggaattcttcgtgatggtatcaaggagactgcc
gaagcagagagtgagctatcaaagaggaccctcttacaagatattaaccggcatgcagca
gtcgtgcttgaagggaggactttagatgtggagctgggcgacacaaggactgtagcagaa
gctcttgcaaggtccaaacaggcagagttggctaccgaaacttcagatgagaatacaaac
caggaacgattagagagggttttccggatgactgaaattgatgatctgcaggctcctcgt
gaccttccgcttgcacagctttgtatcaaggacccgagagagtactttgattctcagcaa
gccaatgcactgaaagctttagggaatgctggtgccggaacaagaccaataaattgcagc
ctgagcgctgaggaagcatatagttctttgagggaacagatttctgagatgagagcagtt
ggattgagtgatccagtcgttaaacctgaagaggctcttaaggttagtaatgtcctgact
cagcaactctcaagtagtacacactataatcttggaaagaatcctcaagagagtgtcctt
gataggttacctggcaaaactaaggatgaacttctacatcactggacatcaattcaggag
ctactgcgacatttctggtcatcatatccaatcacaacatcatacctttatttaaaggtg
agcagattgaaggatgctatgatgcagatctatcctaagctacaggagacaaaggaatct
gtgcaatcggatttccggcatcaggtttctctgcttgttcaacccatgcttcaggttttg
ggtaaagcacaccacgtcagcaggaacatccaaacatgctcccaacaagttttgccttta
ttggtcactgtctttatttgttcttga
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