Methanosarcina siciliae C2J: MSSAC_0252
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Entry
MSSAC_0252 CDS
T03863
Name
(GenBank) RNA-2',3'-PO4:RNA-5'-OH ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
msj
Methanosarcina siciliae C2J
Brite
KEGG Orthology (KO) [BR:
msj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
msj03016
]
MSSAC_0252
Enzymes [BR:
msj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MSSAC_0252
Transfer RNA biogenesis [BR:
msj03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MSSAC_0252
Prokaryotic type
tRNA splicing ligases
MSSAC_0252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AKB34842
UniProt:
A0A0E3PJK2
LinkDB
All DBs
Position
304491..305954
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AA seq
487 aa
AA seq
DB search
MEGEHRDIRCMVRKLSDNNWEIPKGHIPNMRVPGRLFVSESLLDGIEPGTIDQIANVATL
PGIQKYSMAMPDAHLGYGFAIGGVAAFDTEEGIISPGGVGFDINCGVRLIRTNLRKEDVV
PEIKRLTDELFTNVPAGVGSKSRFRASDQELDGAFLEGAKWAVDAGYGVEADVVHCEGNG
YLEGADTAHVSTKARKRGKPQLGTLGSGNHFLEVQYVDEIYDREVASAFGLEEGQVTVMI
HCGSRGAGHQICTDHLKELSQAVKKYGIEIPDKQLACAPAQSREAQNYFKAMLCAANYAW
ANRQMITHWTRESFEKVFGRDADDMGMSLLYDVAHNVAKLEDHNIEGRNKEVYVHRKGAT
RAFPAGHPEVPAAYRDVGQPVLIPGSMGTPSFILCGAKDSMDVSFGSACHGAGRVMSRAH
AKKEFHGQSVKENLEAHGITVRATHPSVIAEEAPGVYKSSSEVVNVVHELGIARKVARVI
PLGVAKG
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atggaaggcgaacaccgggatataagatgtatggtccggaagctttccgataataactgg
gaaatcccgaaagggcatatccccaatatgagggttccagggcgcctgtttgtatccgaa
agtttgcttgatggtatcgagcccggtactatcgaccagattgcaaacgtggcaactctt
cctggcattcagaaatattccatggcaatgcctgatgctcacctcggctacggttttgct
atagggggcgttgcagcttttgataccgaagagggaattatcagtccgggtggagtgggt
tttgacatcaactgcggggttcggctaatccgtacaaacctccggaaagaagatgtggtt
cctgaaatcaaaaggctgaccgacgagctgtttaccaatgtgcctgctggagtcgggtca
aaaagccggttcagggcttctgaccaggaactggacggtgcgtttcttgagggagcaaag
tgggcagtagatgccgggtatggtgtggaagcggatgtggtacactgtgaggggaatggt
tacctggaaggagcagacactgctcatgtaagtacaaaggcaaggaaacgcggaaaaccc
cagttagggactctcgggagcggcaaccatttccttgaagtccagtatgtggatgagatt
tatgaccgggaagtggcatcggcattcgggcttgaagagggacaggttacggtcatgatc
cactgcgggtccagaggcgcagggcatcagatatgcactgaccacttaaaagaactctcc
caggctgtgaagaaatacgggattgaaatcccggacaagcagcttgcctgtgctccggct
cagtccagggaagctcagaactatttcaaagctatgctctgcgctgcaaactatgcctgg
gctaacaggcagatgatcactcactggacacgtgaatcttttgaaaaggtatttggcagg
gatgccgatgatatgggaatgagccttctgtacgacgttgctcacaacgtggcaaaactg
gaagatcataacattgaaggcaggaataaagaggtttacgtgcacagaaaaggggcaaca
agagcatttcctgccgggcatccggaagttccggccgcatacagggatgtgggacagccg
gttttaattcccggaagcatgggcacgccttctttcatactctgcggggcaaaagattct
atggacgtttctttcggtagtgcttgccacggagccggtagagttatgagcagagcccat
gcaaagaaagagttccacggacaaagtgtaaaagagaaccttgaagcccacggaatcact
gtaagggcaactcacccctccgtaattgccgaagaggctcccggggtgtacaagtccagc
agtgaggtggtaaatgtcgtgcacgagcttggtattgcccgcaaggttgcaagagttatc
ccgcttggggtcgcaaagggttaa
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