Methanosarcina siciliae C2J: MSSAC_0321
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Entry
MSSAC_0321 CDS
T03863
Name
(GenBank) DNA repair helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
msj
Methanosarcina siciliae C2J
Pathway
msj03022
Basal transcription factors
msj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msj00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
MSSAC_0321
09124 Replication and repair
03420 Nucleotide excision repair
MSSAC_0321
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msj03021
]
MSSAC_0321
03036 Chromosome and associated proteins [BR:
msj03036
]
MSSAC_0321
03400 DNA repair and recombination proteins [BR:
msj03400
]
MSSAC_0321
Enzymes [BR:
msj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
MSSAC_0321
Transcription machinery [BR:
msj03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
MSSAC_0321
Chromosome and associated proteins [BR:
msj03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
MSSAC_0321
DNA repair and recombination proteins [BR:
msj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
MSSAC_0321
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
ResIII
DEAD
Zot
HBB
PhoH
ATPase
HTH_56
nSTAND3
AAA_34
HK
OmpH
Sigma54_activat
Motif
Other DBs
NCBI-ProteinID:
AKB34911
UniProt:
A0A0E3LC51
LinkDB
All DBs
Position
372237..374612
Genome browser
AA seq
791 aa
AA seq
DB search
MEQKNGYMRYFTKKSCYPNQAEAMEKIHSALLNQKIVLFEGACGTGKTLSSLAPALHVGR
KLNKAVIIVTNVHQQMVQFIHEARDINRDNSIKTTVFKGKTSMCPDNLDYEECRLKGENT
YDLLEFEREISSKEKDLKDAYEKYKRTKDPALYALRTELEKELEEARKKARSLRGHSCSK
LYEVLRFEGNEFSSWLFSDVRSPEEIMEYAEDRGMCGYELLKKELKNTELLICNFHHVLN
ADIFMTLLKWLERDPEDIILIFDEAHNIEASARSHSSITLSELTIEKALSEVGEIPEPDN
SPVFGAGTGAPGTGSGQGLGIPLDQDYASRLYAKRLFSCLLAAVRETYNSKLKFGERNRL
GKHWQDIQISDPYERLDVLKARFLRDAKKEGFADEEKVLTRLREIGEFGARLEDVYAENY
KKGLLPVPKRSQIRYVADFLSSYLVLSDRQNYYPILNMRRDFKSNRAVGRLELFTCIPKN
VTQPLLDSVYSAVLMSATLRPFEMIKSTLGITREVEEITYGTTFPQEKRLTLVVSVPPLF
AKNRDSPETLESLKEALLSATAVSLGNVIIYFQSSAEAHRYKILLEPELSVPVFLDEVGV
SAQEIRQKFFKIGEQGGKAVLITYLWGTLSEGVDFRDSRGRTVIVVGVGYPALNDRIKAV
ESAYDTVFGCGNGWEFAVQVPTIRKVRQAMGRIVRSPGDFGVRILLDARYQGSQIRKLGK
FSVFGYFPPEESKEFLDVAPRDVGSLVEDFFANLVPCKSEKKEKGTKRNGKEGQESPVSG
RVEFGSLAEKL
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atggaacagaagaacggatacatgaggtactttacaaaaaaaagctgctaccctaaccag
gcagaagccatggagaagattcactctgctctcctgaatcagaaaattgtactttttgaa
ggggcttgcggaacaggcaagaccctgagctcccttgctcctgcccttcatgtgggcagg
aagctcaacaaggccgtaatcatagtcacgaatgtccaccagcagatggtccagttcatc
cacgaagccagggacatcaacagggacaacagcataaaaacaactgttttcaagggcaag
acctctatgtgtcccgataacctcgactacgaggagtgcaggctgaaaggggaaaacacc
tatgatctgcttgagtttgagcgtgagatctcttcaaaggaaaaagatctcaaggacgcc
tacgaaaaatacaaacggacaaaagaccctgccctttacgccctcaggaccgagcttgaa
aaagaactcgaagaagcccgaaaaaaggcccggtctctgaggggtcactcctgctcaaag
ctttatgaggttctcaggttcgaaggaaacgagttttcttcctggctcttttcggacgta
agaagccccgaggagattatggaatatgcggaggatagaggtatgtgcgggtacgagctg
ctcaaaaaggaactaaaaaatacggagcttcttatctgcaatttccatcacgtactcaat
gctgacatcttcatgactctccttaaatggcttgagcgagaccctgaagatattattctg
atctttgacgaggcccacaacattgaggcttctgccaggtctcattcctccataacgctc
tccgagctgaccattgaaaaagccctttccgaggtaggggaaatccccgaacctgacaac
tctccggtattcggagcaggtacaggtgcgcccgggacaggctccggacaggggctcggg
attcctcttgaccaggactatgcctcccgtctttatgcaaaaaggctcttttcctgcctt
ctcgccgcagtcagggagacctacaactcaaagctgaaattcggggagagaaacaggctt
gggaaacactggcaggacatccagatcagcgacccttatgagcgccttgacgtcctgaaa
gctcgttttttgcgggatgcaaagaaagaagggtttgcagatgaagaaaaagtgctgacc
cggctgcgagaaatcggggaattcggagcccggctggaagatgtctatgccgaaaattac
aaaaaaggactgcttcccgtgcccaaacgttcccagatacggtatgttgctgatttcctt
tcttcatatcttgtgctttcggacaggcagaactattatccgatcctgaacatgcgcagg
gacttcaaaagcaacagggcagtcggaaggcttgaacttttcacctgtattcccaaaaat
gtgacccagcctttgcttgattccgtctattcggctgtgcttatgtcagctactctccgg
cctttcgagatgatcaaatccacgctgggcattacccgggaagtagaagaaattacctac
gggactacttttccacaggaaaaaaggctgactcttgtggtttcggtccctcccctcttc
gcaaaaaacagggacagccccgaaaccctggaaagtttgaaagaagcgcttctttctgct
acggctgtatcgctgggaaatgtgatcatttatttccagagttctgcggaagcccaccgc
tataaaatactccttgaaccagagctttcagtccctgttttccttgacgaggtcggagtc
tcagcccaggaaatcaggcagaagtttttcaaaataggggagcagggaggaaaagccgta
ctcataacctatctctggggaaccctgagtgaaggtgttgatttccgggactctcgcggc
aggaccgtgattgttgtgggggttggatacccggctctgaacgatagaataaaagctgtg
gagtcagcttatgatactgtttttggctgtgggaacggctgggagtttgcagtccaggtg
ccaactataaggaaggtcaggcaggcaatgggaagaatcgtccgctcccctggagatttc
ggggtaaggattctccttgatgctcgctaccagggttctcagattcgtaagctgggtaag
ttttcggtttttggatatttccctcccgaggaaagtaaggagtttctggatgtagctcca
agggacgtcggaagtcttgtagaagatttttttgcaaatctagttccttgcaaatcagaa
aaaaaggaaaaaggaacaaaaaggaatggaaaagaggggcaagagtctccggtttcaggt
agggtggagttcggaagtcttgcagaaaagctctaa
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