Methanosarcina siciliae C2J: MSSAC_0665
Help
Entry
MSSAC_0665 CDS
T03863
Name
(GenBank) exosome complex RNA-binding protein Csl4
KO
K07573
exosome complex component CSL4
Organism
msj
Methanosarcina siciliae C2J
Pathway
msj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSSAC_0665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msj03019
]
MSSAC_0665
Messenger RNA biogenesis [BR:
msj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MSSAC_0665
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
MSSAC_0665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
OB_RRP5_4th
S1
ECR1_N_2
S1_RRP5
ALS_ss_C
HypA
zf-C3HC4_3
Zn_ribbon_PaaD
Motif
Other DBs
NCBI-ProteinID:
AKB35255
UniProt:
A0A0E3PJU8
LinkDB
All DBs
Position
774581..775195
Genome browser
AA seq
204 aa
AA seq
DB search
MPGFRPPAREPVRSEEDLEKGGFVLPGELVGTTEEFKPGSGATIIGGDIYSTATGSVLID
RKARVVSVKPKTLTPNILKVGDIVYGKITDVRESGAMVEVAGIEGKENREIVNSRPGDVH
VSNVRDSYVKRLSDEFRPSDIIKARVIDVDRMRLTTSEDSLGVVKAYCSNCRGELVLEGK
KLKCPVCNMTETRKISTEYGKGIQ
NT seq
615 nt
NT seq
+upstream
nt +downstream
nt
atgccggggttcaggccgccagccagagaacccgtcagatctgaagaagaccttgaaaaa
ggaggctttgtccttccgggtgaacttgtcggaactacagaagagtttaagccaggttcc
ggggccacaataattggtggggatatctattccactgccacaggaagtgtgctcattgac
agaaaagccagagtggtctcggttaagccaaaaacccttaccccaaatatccttaaggta
ggggacatagtttacggcaagatcactgacgtccgcgagtccggggcgatggtggaagtt
gcaggcatagaaggaaaagagaacagggaaattgtcaactcaaggccaggggatgtccat
gtttcaaatgtgagggactcctatgtaaagagactctcagatgagttcagaccctctgat
atcataaaagccagagtcattgacgttgacagaatgcgccttacaacatccgaagattcc
cttggagttgtaaaagcttactgctcaaactgcagaggcgaacttgtcctggaagggaaa
aagcttaaatgcccggtctgcaatatgactgaaacccgtaagatctcaaccgagtacggg
aaaggaatccagtaa
DBGET
integrated database retrieval system
