Methanosarcina siciliae C2J: MSSAC_3693
Help
Entry
MSSAC_3693 CDS
T03863
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
msj
Methanosarcina siciliae C2J
Pathway
msj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSSAC_3693
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msj03019
]
MSSAC_3693
03009 Ribosome biogenesis [BR:
msj03009
]
MSSAC_3693
Enzymes [BR:
msj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MSSAC_3693
Messenger RNA biogenesis [BR:
msj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MSSAC_3693
Ribosome biogenesis [BR:
msj03009
]
Prokaryotic type
rRNA helicases
MSSAC_3693
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
ERCC3_RAD25_C
CMS1
Cas3-like_C_2
P-loop_SecA
AAA_30
HAUS5
Motif
Other DBs
NCBI-ProteinID:
AKB38283
UniProt:
A0A0E3PQS2
LinkDB
All DBs
Position
4536311..4537978
Genome browser
AA seq
555 aa
AA seq
DB search
MEKLAKFKALGLSDSTLEALKKKGFEEPTPIQEKVIPLFLKGESDIIGQAQTGTGKTTAF
GAPIIEKIPEKSGHVQAIILTPTRELAIQVSEELNSIKGNKKLYIVPIYGGQSMNQQLRI
LKSGVDIVVGTPGRIIDHLGRKSLNLGNIKYFVLDEADEMLNMGFIDDIKEILKATGPDK
RMLFFSATMPKPILGIVKKYMQNYEHVTVEKEDLATKLTEQIYFEVKENDKFEALSRIID
IEDEFYGLVFCRTKTDTGQLAQKLSDRGYAADALHGDLSQQEREKILNKFRKQKINILVA
TDVAARGIDIMDLTHVINYSLPQDPESYVHRIGRTGRAGKQGTAITFVTSTEFRRLTYIK
KTSKSEMKKGRIPEIKDVIKAKRARVKDELEETIKTEEYGDCLEMSERLLEEYPAEKILA
ALLKYTFKEKFDESMYTEISNTSSYVDRKGKTRLFIAMGKSDGMSPEKLSYFIQEELSDS
ELKVRDAEIFPHFSFVTLPFAQAEALLEIFKNKRRGRKPFVELAQKSKGRSQKGSNKGYS
NDRPRNPSRPRNTKK
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaattagcaaaatttaaggcacttgggctctcggacagtacattggaagccctc
aaaaagaaaggttttgaagaaccaacaccgattcaggaaaaagtcatccctctttttttg
aaaggagaatctgacattatagggcaggctcagacaggaacaggaaaaacaaccgctttc
ggagcccccattatagagaagatccctgaaaaatcagggcatgttcaggcaataatcctt
accccaacaagagaacttgcaattcaggtttcagaagagctcaattccataaaaggaaac
aaaaaactttatattgtacctatttacggcggacagtccatgaaccagcaactccgcata
ctgaagagcggagtggatatcgttgtagggacacccggaaggatcatcgaccatctggga
agaaaaagcctcaacctcggaaatatcaaatatttcgtacttgacgaagctgacgaaatg
ctgaacatgggcttcattgacgatataaaggaaatcttaaaggcaacaggccctgataaa
aggatgcttttcttttcagctacaatgccaaagccaatccttgggatcgtcaagaagtac
atgcagaactacgagcatgttacagttgagaaagaggatcttgcaacaaagttgaccgaa
cagatctacttcgaagttaaggaaaacgacaagtttgaagctctcagcagaatcatcgat
atagaagacgaattctatgggctcgttttctgccggacaaagactgacaccggccagctt
gcccagaaactcagcgacagaggctatgcagccgatgccctgcatggagacctctcccaa
caagaacgtgaaaaaatcctgaataagttcaggaagcagaagataaatattcttgtcgca
accgatgttgcagcaagaggcattgatatcatggatctgacccatgtcattaactattcc
ctgccccaggaccctgagtcttatgtgcacaggataggaaggaccggaagggcgggcaaa
cagggaactgctatcacctttgttacatccacagagttcaggcggctcacttacataaaa
aagacctcaaagtccgaaatgaagaaaggccgcatccccgaaataaaagatgtaattaaa
gccaaaagggcgagagtaaaagacgaactcgaagagaccataaagacagaagaatacggg
gactgccttgaaatgagtgaaagactccttgaggaataccctgcggagaaaatcctagct
gccctcttaaagtacacgttcaaagaaaagttcgacgaaagcatgtatacggaaatttcc
aacaccagttcttatgtcgacaggaaaggcaaaaccagactcttcatagccatgggaaaa
tccgatggtatgagcccggaaaaactttcatactttattcaggaagaacttagtgacagc
gaacttaaagtaagggatgcagagattttccctcatttctcctttgtaaccctgcccttt
gcccaggctgaagctctgctcgaaatatttaaaaacaaaagaagaggcagaaaacccttt
gtggaacttgctcagaaatcaaagggaaggagtcaaaaaggttctaacaaaggatacagc
aatgacaggccaagaaatcccagcagaccaagaaatacgaaaaaatga
DBGET
integrated database retrieval system
