Methanosarcina siciliae C2J: MSSAC_4297
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Entry
MSSAC_4297 CDS
T03863
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
msj
Methanosarcina siciliae C2J
Pathway
msj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSSAC_4297
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msj03019
]
MSSAC_4297
03400 DNA repair and recombination proteins [BR:
msj03400
]
MSSAC_4297
Enzymes [BR:
msj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MSSAC_4297
Messenger RNA biogenesis [BR:
msj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MSSAC_4297
DNA repair and recombination proteins [BR:
msj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MSSAC_4297
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
HTH_40
Helicase_Sgs1
ResIII
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
AKB38887
UniProt:
A0A0E3PTQ7
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All DBs
Position
5301872..5304466
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AA seq
864 aa
AA seq
DB search
MSARMHSVLRQYFGYTNFRPLQEEIIRDVLDRKDVFVLMPTGGGKSICYQLPALLLDGVT
VVVSPLISLMKDQVDGLEANGIAAACMNSAQSAREIRDVKTAFLDNRLKILYIAPERLMM
PGTIAFLKKGKISLFAIDEAHCISEWGHDFRPEYRKLKLLRDPKTGFPDVPAIALTATAT
GRVRKDIITQLGLDLDPEKGPYVASFNRSNLYYEVRPKKDTFSEITDYLLRHRNEAGIIY
CQSRNNVETLTKKLNLAGFGALPYHAGLSDSERARNQEMFIKDDVDIIVATIAFGMGIDK
SNVRFVIHYDLPRNLESYYQETGRGGRDGSPCECILFFSRGDRFKIEYFIAQKTNEKEKD
ISLVQLRQMVAYCEGNKCRRQSLLEYFGEELPAPCGNCDTCLKPKDTFDGTEAARKMITC
IQELNQRFGTNYVIDVLTGSKNKKVRQNRHEKLKSHGSGREFTKDQWRSIASEMLNTGLL
EVSGAQYPVLKLNSMSRKILKGSESVELVCPEGFIPGSEESFIPPAPAGKVKAKTEDNIQ
PSATGYSNATDILKKAKLGGLPRSGTEYDPILFERLKALRKKIALKRNLPPYIIFSDTSL
KEMASKFPQSPEEFHSITGVGDHKLRKYGDDFLTEIGDYCRDYGLISGENDEDSGDSEHV
PDKQRETSKGRNLKSAPSKLEIEAKGLDFSNPVSEIGNGSASGISSSAILPENSSEARSL
PAKRVRYLDMSIQDWSEVDSSEIDSSEIDSSEIDSLEIGLFEQASLEKTYSLYLQGLDIG
EIAEIEGLSIKNAYRQFEKLILAGKVRKIEGLVPSERQQQIKKAVEVIEIEFESLLRARL
GENCQEEEMKLIRAFLLSKMLFSV
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccagaatgcactccgtactccgtcagtacttcggatatacgaattttcgtccc
ctgcaggaggaaattatcagggatgttctggaccgaaaagatgtcttcgtgctcatgcct
acgggagggggtaagtcaatctgctatcagctgcctgcccttcttctggacggggtcact
gttgttgtttctcccctgatttcccttatgaaagaccaggttgacgggcttgaagcaaac
gggattgctgcagcctgtatgaacagtgcccagagtgccagggaaatccgggatgttaaa
acagcttttctggataacaggttgaagatactctatattgcacccgagaggctcatgatg
cccgggaccattgccttcctgaagaagggcaaaattagcctttttgcaatcgatgaagcc
cactgcatttctgaatggggccatgatttccggcctgagtatcggaaactgaaacttctg
agggatccgaagacagggtttcctgatgttccggccattgcactcacggctacggctacc
ggcagggtcagaaaagatatcataactcagctcggacttgatctcgacccggaaaaaggt
ccttacgttgccagctttaaccggagcaacctttactatgaggtcagaccgaagaaagat
accttttccgagattaccgactacctgctcaggcacagaaatgaagccgggatcatttat
tgccagagccggaacaacgtggaaacccttacaaaaaagcttaatcttgcagggttcggg
gctcttccctatcatgccggactttccgattccgaacgtgcccgaaaccaggagatgttc
ataaaagatgatgtggacataatagtggcgacaatcgctttcggcatggggatcgacaag
tccaatgtccgttttgtaatccactatgatctcccccggaaccttgaaagctattaccag
gaaacaggaagaggaggcagggacggcagcccatgcgaatgtatcctttttttcagcagg
ggggaccgctttaaaattgagtactttattgcacagaaaacaaatgagaaagaaaaggac
atctctcttgtgcagttaaggcagatggtagcctactgcgaaggaaataaatgcaggcgc
cagtcactccttgagtacttcggagaagagcttccagctccatgcggaaactgtgatacc
tgcctcaagcctaaagacacttttgacgggaccgaagctgccagaaaaatgatcacctgt
attcaggaattgaaccagcggtttggaacgaactatgttattgatgtgctcacaggctca
aagaataaaaaggtcaggcaaaaccgccatgaaaagctgaaatctcatgggagcggcagg
gagtttacaaaggaccagtggaggtcgattgcttccgaaatgctgaacaccgggcttctt
gaagtaagtggggcacagtaccctgtcctgaaactgaactctatgagcaggaagattttg
aagggctcggagagtgttgagcttgtctgtcctgagggttttattcccggatccgaagag
agttttatccctccggcccctgcaggtaaggtcaaagcaaaaactgaagataatatacag
ccttctgccaccggatactcaaatgctaccgatatccttaaaaaagcgaagttaggagga
cttcccagatcggggacagagtatgaccctattctttttgagaggctaaaagccctgaga
aaaaagatcgctttaaagagaaacctacccccatacatcattttttccgataccagcctg
aaagaaatggcttcaaagttcccgcaaagccctgaagagttccattctatcacaggggta
ggagaccataaactccggaaatacggggacgatttcctcacggaaataggggattactgc
agggactacggcttaatttctggtgagaacgatgaagactccggagatagcgaacatgtt
cccgataaacagagagaaacctcaaagggccgaaacctcaaaagtgcaccttcaaaactc
gaaattgaagccaaagggcttgatttttcaaatcctgtttcagaaatcggtaacggaagc
gcatcaggaatatcatcctccgccatcctccccgaaaactcttctgaagctcgtagcttg
cctgcaaagagagtaaggtatctggatatgagtatccaggattggtcggaagtagattct
tctgaaattgattcctctgaaattgattcttctgaaatcgattcccttgaaataggtctg
tttgaacaggcctcgcttgaaaagacttattctctctatttgcagggtctcgatatcggt
gaaattgcagaaatagaaggtttgagtataaaaaatgcttacaggcagtttgaaaagctg
atacttgccgggaaggtccgaaaaattgaagggcttgtgccgtcggaaagacagcagcaa
ataaaaaaggcagttgaagtaatagaaattgaatttgaatccctgcttagggcgaggctt
ggagagaactgccaggaagaggaaatgaagcttataagggcttttctcctctcaaaaatg
cttttttcagtctga
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