Methylocella silvestris: Msil_0015
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Entry
Msil_0015 CDS
T00802
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
msl
Methylocella silvestris
Pathway
msl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Msil_0015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msl03019
]
Msil_0015
03400 DNA repair and recombination proteins [BR:
msl03400
]
Msil_0015
Enzymes [BR:
msl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Msil_0015
Messenger RNA biogenesis [BR:
msl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Msil_0015
DNA repair and recombination proteins [BR:
msl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Msil_0015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
ACK48998
UniProt:
B8EJJ5
LinkDB
All DBs
Position
13230..15200
Genome browser
AA seq
656 aa
AA seq
DB search
MQASDARTPAAPSTNKVEASGRSGEARDALKRFFGFDDFRPGQREVLDAALAGQNILAVM
PTGSGKSLCYQLPALMRPGLTIVVSPLIALMRDQVQQLRERGIAAAALNSVNSSADNAEI
EAGLRQRRYRLVYVAPERLARADTRALLREAGANVLAIDEAHCVSQWGHDFRPEYADLAS
VARAIAGGPDGALQLIAVTATADPPTRAEIIAKLFPSEPRVFIRSFDRPNIHLAMRRKAN
VVSQIATEIDRHRGHAGIVYCASRKGVEKLSETLRAAGVAALPYHAGLAPDIRSAHQDEF
LHREGVVIVATIAFGMGIDKPNVRFVCHADLPQSVEAYYQEIGRAGRDGQPADALLLFGE
ADVRLRERQIAEGDAAPERKRLERRKLNALLALCETPRCRRSTLLAAFGEDSGPCGNCDI
CEGRWPFYNGVLAAKKALSAIHRTSGRFFYGHLTNLLIGNATAAIVRHGHDLLPTFGVGK
EFTPAEWRSVFRQLQAAELIEQAADDRDRWIITPAGRDVLTGSAALELRAEIGLPSGRRV
GVTQALKRIEAVAAEEAETDGQGVTPRAIRPPDAATDLTATQASLLSALKARRLELARAQ
KQPPFVIFHDSVLIAIAKARPASLGDLALIHGVGPTKLQRYGAAFLDVLAGDEGAS
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcgtccgacgcccgtactccagccgcgccttcgaccaacaaggtcgaggcgtcg
ggccgatcgggcgaagcgcgggacgcgctcaagcgatttttcggcttcgacgatttccgg
ccgggacagcgcgaagttctcgacgccgcgctcgcaggccaaaacattcttgctgtgatg
ccgaccggctcgggcaaatcgctgtgctatcagctgcccgctctgatgcggccgggattg
accatcgtcgtgtcgccgctgattgcgctgatgcgagatcaggtgcaacagctgcgcgag
cggggaatcgcggccgcggcgctgaattcggtcaacagctcggccgacaatgcggagatc
gaagccggactgcggcagcgccgctaccgtcttgtctatgtcgcgccggaacggctggcg
cgcgcggacacgcgggcgctattgcgtgaagccggcgccaatgtcctcgccatcgacgaa
gcccattgcgtatcgcaatggggccatgactttcgccccgaatatgccgatctcgcctcg
gtcgcgcgggccattgcaggcggccccgacggcgcgttgcagctcatcgccgtgacggcg
acggcggacccgccaacccgcgccgagatcatcgcaaagctgtttccgtccgagccgcgc
gttttcatccgctcgttcgatcgtccgaatattcatctcgccatgcggcgcaaggcgaat
gtcgtttctcagatcgcaaccgagattgaccgccatcgcggccacgccggaatcgtctat
tgcgcctcccgcaagggcgtcgaaaagctcagtgaaaccctgcgcgcggcgggcgttgcg
gcgctgccctatcatgccgggctcgcgccggacatccgctcggcccatcaggatgagttt
ctgcaccgtgagggcgtcgtgatcgtagcgaccatcgctttcggcatgggcatcgacaag
cccaacgtccgcttcgtctgccacgcggatctgccgcaaagcgtcgaggcctattatcag
gagatcggccgcgccggccgagacggccagcccgcagatgcgctgctcctgttcggcgag
gccgatgttcggctgcgcgagcgccagatcgccgaaggcgacgccgcgcccgagcgcaag
cggctcgagcggcgcaagctcaacgcgctattggcgctatgcgagacgccgcgctgccgc
cgcagcacgctgcttgcggctttcggcgaagactccgggccttgcggcaattgcgacatc
tgcgaaggacgctggcccttctataacggcgtgctcgcggcgaaaaaggccctctccgcc
attcaccgcacgtcggggcgcttcttttacggccatctgaccaatctgctgatcggcaac
gccaccgcggcgatcgtcaggcacggtcatgatctgctgccgacgttcggcgtcggcaag
gagttcacgccggcggaatggcgcagcgtctttcgccagttgcaggcggccgagctgatc
gagcaggcggccgacgatcgcgaccggtggatcatcacgccggccggccgcgacgtgttg
actgggagcgcggcgcttgagcttcgcgccgagatcggcctgccgagcggccggcgcgtg
ggcgtgacgcaggcgctcaagcggatcgaggcggtcgccgcggaagaagccgagacagat
ggacaaggcgtgacgccgcgcgcgatccgcccgcccgacgcagctacggatctgacggcg
acgcaggcgagtctgctctcggccctgaaggcgcgccggcttgaactcgcaagggcgcag
aagcagccgcctttcgtcatttttcacgacagcgtgttgatcgcgatcgccaaagcgcgc
ccggcgagccttggcgaccttgcgcttatccacggcgtcggtccgaccaagctacaacgc
tatggagcggcgtttctcgacgtgctggcgggggatgaaggcgcgagctga
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