Methylocella silvestris: Msil_0729
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Entry
Msil_0729 CDS
T00802
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
msl
Methylocella silvestris
Pathway
msl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Msil_0729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msl03019
]
Msil_0729
03009 Ribosome biogenesis [BR:
msl03009
]
Msil_0729
Enzymes [BR:
msl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Msil_0729
Messenger RNA biogenesis [BR:
msl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Msil_0729
Ribosome biogenesis [BR:
msl03009
]
Prokaryotic type
rRNA processing factors
Msil_0729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF7558
Motif
Other DBs
NCBI-ProteinID:
ACK49700
UniProt:
B8EPB2
LinkDB
All DBs
Position
802601..805843
Genome browser
AA seq
1080 aa
AA seq
DB search
MANKMLIDASHPEETRVVVLRGNRVEEFDFESASKKQLRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVVDRQALIEEEARAQQREADDEESSPRRSRRHRRGDRN
GGDRSGNGDRNGKRAEKRSGDAETLSEPYEASSEETQQFDAAQDDAGSPNRNEARGEEHA
GERFEAEAQDRRAEEAPGDDFMSFEAVSDDVERDFEDAPPAAAFTAAPDAVRSTEEAFSP
AGEDAQQDADQAASVAADSHESGAYEEQPAPLFETGAAAPYAEAASVSLDEPDEAPSGQG
SVVEARRSSESDEESEEEDEHVEQLGGDAMEEVPVRPQRYRRQYKIQEVIKRRQVLLVQV
VKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITDSTDRQRLKSIAQELEVPEG
MGVILRTAGASRTKPEVKRDFEYLLRMWETVRETTLKSSAPTLVYEEGSLIKRAIRDLFN
KDIDDIVVAGDKGYREARDFMRLLMPSHVNSVQPYRDAQPIFSKSDVETQLDAMFLNQVT
LKSGGYIVINQTEALVAIDVNSGRSTREHNIEDTALRTNLEAADEVARQLRLRDLAGLIV
VDFIDMEEGRNNRAVERRLKDALKNDRARIQVGRISHFGLLEMSRQRIRTGVLEGSTELC
PHCSGSGILRSTASIALHVLRVAEDALLKSASHDLIIRTRSAVALYILNEKRAHLRDLER
RFGVAVSIEVDDSLIGSVYHAMERGEPASGGHEPIELAAPEPAQIAARDFVEDAAPGFAP
EDEAPEGAAEDGDEDQEPGDANARGEGESEGDAENRRKRRRRRRRGRGGDREGSGIAANA
PQPSDDALGVIAQYGGLPGAIPSVDVIAEAFENADYQPSEVNAETAPELAADESGEVVET
SFEREAAPAKPARRPRRARSREAAPEEAESAEPVTDLASTGAAPSGVEGEEDDAEAAQPA
RRSRRTPRPRAPRRAASELPAPASEAEAATLDLQEAAAAPAPLSEPTLPFESAPPAATAV
EPPAPSAFEPATAASETEASTASSIVGSDEPAPGTESNPPESDRPKRSGWWQRAKATLGR
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaaaatgctcatcgacgcctcccacccggaggagacccgcgtcgtcgttctc
cgcggcaaccgcgtcgaggaatttgacttcgaatccgcaagcaagaagcagcttcgcgga
aatatctatcttgccaaggttacgagggtcgagccttcgcttcaggccgccttcgtcgat
tacggcggcaaccgccacggtttcctcgccttttcggaaatccacccggattattatcag
atccccgtcgtcgaccggcaggcgctgatcgaggaagaggcgcgcgcgcagcaacgcgag
gccgatgacgaagagtccagcccgcggcgcagccgccggcatcgtcgcggcgaccgtaac
ggcggcgatcgcagcggcaatggcgatcgtaacggcaagcgcgccgaaaagcgttccggc
gacgccgagacgctgtccgaaccctatgaggcctcgtccgaggagacgcagcagttcgac
gcggcccaggacgacgccggaagcccaaaccgcaacgaagcgcgtggcgaggaacatgcc
ggagagcgtttcgaggcggaggcgcaggatcgccgcgccgaagaggcgcctggcgacgat
ttcatgtcttttgaagccgtctcagacgatgtcgagcgggatttcgaagatgcgccgcca
gcggccgccttcaccgccgcgcccgacgccgtccggtcgaccgaggaagcgttttcgcca
gctggcgaggacgcgcaacaggacgccgatcaggctgcgagcgttgcggccgactcccat
gagtcaggcgcctatgaagagcagccggctccgctttttgagacgggcgcggcggcgcct
tatgcagaagcggccagcgtgtctctcgacgagcccgacgaggctccgtccggccaaggc
tccgtcgtcgaggcgcgccgttcgtccgaatccgacgaggagtccgaggaagaggacgag
catgtcgaacaactcggcggcgacgccatggaggaggttccggtccggccgcagcgctat
cgcaggcaatataagatccaggaagtcatcaagcgccgtcaggtgcttctggtgcaggtc
gtcaaggaagagcgcggcaataagggcgcggcgctgaccacctatctctcgctcgccggc
cgctattccgtgctgatgcccaacactgcgcgcggcggcggcatctcccgcaaaatcacc
gattcgacggaccggcagcggctgaaatccatcgcccaggagctcgaagtgccggaaggc
atgggcgtcatcctgcgcacggccggcgccagccgcaccaagcccgaggtcaagcgcgac
tttgaatatctcctgcgcatgtgggagaccgtgcgcgagacgacgctgaaatcctcggcc
ccgaccctcgtctatgaggaaggttcactgatcaagcgcgccatccgcgatctcttcaat
aaggacatcgacgatatcgtcgtcgccggcgacaagggctatcgcgaggcgcgcgatttc
atgcgcctcttgatgccgagccatgtaaatagcgttcagccctatcgcgacgcgcagccg
atcttctcgaaatcggacgtcgagacgcagctcgacgccatgttcctcaatcaggtcacg
ttgaagtcgggcggctatatcgtcatcaaccagaccgaggcgctggttgcaatcgacgtc
aattcggggcgttcgacccgcgagcacaatatcgaggacaccgctcttcgcaccaacctc
gaggcggccgatgaggtggcgcggcagcttcgcctgcgcgatctcgccgggctgatcgtc
gtcgatttcatcgacatggaggaaggccgcaacaaccgcgccgtcgagcgccggttgaag
gacgcgctgaaaaacgatcgcgcgcgcatccaggtcggccgcatctcgcatttcggcctg
ctcgaaatgtcgcgccagcgcattcgcaccggcgtgctcgaaggctcgaccgaactctgc
ccgcattgttccggctcgggcatcctgcgctcgaccgcctcgatcgcgcttcatgtgctt
cgcgtcgcagaggacgcgctgctcaaaagcgccagccacgatctgatcatccggacgcgg
tcggcggtcgcattgtatattctcaacgaaaagcgcgcgcatctgcgcgatctcgagcgc
cgctttggcgtcgccgtcagcatcgaggtggacgacagcctgatcggctccgtctatcac
gccatggagcgcggcgagcccgcctccggcggacatgagccgatcgaacttgcggcgccc
gagcccgcgcagatcgcggcgcgcgacttcgttgaagacgcggcgcccggttttgcgccg
gaggatgaggcgccggaaggcgctgctgaggatggcgacgaggatcaggagccgggcgac
gccaatgcccgcggagagggcgagagcgaaggcgacgccgagaacaggcggaagcgccgg
cgccggcgccggcgcggacgcggcggcgatcgtgaaggctccggcattgcggccaatgcg
ccgcagccgtcggacgatgcgcttggggtcatcgcccaatatggcggcctgccgggcgcc
atacccagcgtcgacgtcatagccgaggctttcgaaaacgccgactatcagccctccgaa
gtgaatgcggagacggcgcccgagttggcggcggacgaatccggcgaggtcgtcgagacg
tcttttgagcgcgaagcggctcccgccaagcctgcgcgccggccgcgccgcgcccgttcg
cgcgaggccgcgccggaagaggccgagagcgccgagcctgtgacggaccttgcctcgaca
ggcgccgctcccagcggcgtcgaaggcgaggaagacgacgccgaggccgcgcagccggca
aggcgctcgcggagaaccccgcgcccccgcgcgccgcgccgcgccgcctccgaattgccc
gcccccgcgagcgaggcggaagcggcgacgcttgatcttcaggaagccgccgcagcgccc
gcccccctgtccgagccaaccttgccgttcgagtcggctccgccagccgcgaccgccgta
gagccgccggcgccttccgccttcgagccggcgacggccgcctcagagacggaggcttcg
acagcctcctccatcgtcggctctgacgagccggcgccggggaccgagtccaacccgccg
gagtcggatcggccgaagcgatccggctggtggcagcgcgccaaagccacgcttggccga
taa
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