Methylocella silvestris: Msil_0808
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Entry
Msil_0808 CDS
T00802
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
msl
Methylocella silvestris
Pathway
msl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Msil_0808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msl03019
]
Msil_0808
Enzymes [BR:
msl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Msil_0808
Messenger RNA biogenesis [BR:
msl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Msil_0808
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
SMC_N
AAA_22
Utp25_C
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
ACK49778
UniProt:
B8ER33
LinkDB
All DBs
Position
888427..889773
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AA seq
448 aa
AA seq
DB search
MQDFSGLGLAAPLLLALSKLGYTKPTPIQAQAIPHVLTGRDLVGIAQTGTGKTAAFALPI
LHQLAANPQQPPRGGARVLVLSPTRELASQIAESFRSLGSEMQLSVAVVFGGVPHGAQIR
ALQRGLDVLVATPGRLVDHLDSGVAHLGKTEFFVLDEVDQMLDLGFVKAIHRIVKTLPQR
RQNLFFSATMPTEIAKLAADLLKNPAQVSVTPVAKTADRVEQQVLFVETHRKRDILVDLL
ADAKMARTIIFTRTKRGADKVAQHLEVCGVSAAAIHGNKSQSQRERSLASFRAGRVRALV
ATDIAARGIDVDGVTHVVNFDLPEVPEAYVHRIGRTARAGAEGVAISLCDGAERDLLRNI
ERLTRLRLPTEDRRAAPGSPESRPPVRAAQTARPLEQRRPPNAGPGRPQERGRGAGPASS
PAQSRPRFGASRPQGERRAGDREASHQG
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
ttgcaagatttctccggactcggccttgccgcgccccttctcctcgcgctgagcaagctc
ggctatacgaagccgacgccgattcaggcgcaggccatcccccatgtgctgaccggccgc
gacctcgtcggcatcgcccagacgggcaccggcaagaccgccgccttcgcccttcccatt
ctccatcagctcgccgccaatccgcagcagccgccgcgcggcggcgcccgcgtgctggtg
ctgagcccgacgcgcgaactcgccagccagatcgccgagagcttccgcagcctcgggtcg
gaaatgcagctatccgtcgccgtggtgttcggcggcgtgccgcatggcgcgcagatccgc
gcgctccagcgcggcctcgacgtgctcgtcgcaacgcccggccggctggtcgatcacctc
gattccggcgtcgcgcatctcggcaagactgaattcttcgtcctcgacgaagtcgatcag
atgctggatctcggcttcgtcaaggcgattcaccgcatcgtcaagaccctgccgcagcgc
cgtcagaatttgttcttctcggcgaccatgccgaccgagatcgccaagctcgcggccgac
ctcctgaaaaatccggcgcaagtctcggtcaccccggtggcgaagacggcggatcgcgtc
gagcagcaggttctgttcgtcgaaacgcacagaaagcgcgacattctcgtcgatctcctg
gccgacgccaaaatggcgcgcacgatcatcttcacgcgcaccaagcgcggcgccgacaag
gtcgcccagcatctcgaggtctgcggcgtctccgccgcagcgatccacggcaacaagagc
cagagtcagcgcgagcgttcgcttgcctcgttccgcgccggccgggttcgcgcgcttgtc
gcgaccgacatcgcggcgcgcggcatcgacgtcgacggcgtcacccatgtcgtcaatttt
gatctgccggaagtgcctgaggcttatgtccaccgcatcggccgcaccgctcgcgccggc
gccgaaggcgtcgccatctcgctctgcgatggcgccgagcgcgatttgttgcggaatatc
gagcggctgacgcggctgcgtctgccgacagaagatcgccgcgccgcgccgggttcgccc
gaatcgcgcccgccggtccgcgcggcccagacggcgcgtccgctcgaacagcgccgccct
ccgaacgccggccctggccggccgcaggaaagagggcgcggcgcaggcccagcctcctcc
cccgcgcagtcgcgcccccgtttcggcgcgtcgcggccgcagggcgaacgccgcgccggg
gatcgcgaagcctcgcatcagggctga
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