Methylocella silvestris: Msil_3869
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Entry
Msil_3869 CDS
T00802
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
msl
Methylocella silvestris
Pathway
msl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
msl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Msil_3869
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msl03021
]
Msil_3869
03400 DNA repair and recombination proteins [BR:
msl03400
]
Msil_3869
Enzymes [BR:
msl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Msil_3869
Transcription machinery [BR:
msl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Msil_3869
DNA repair and recombination proteins [BR:
msl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Msil_3869
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
ACK52751
UniProt:
B8EMS2
LinkDB
All DBs
Position
4238247..4242440
Genome browser
AA seq
1397 aa
AA seq
DB search
MNQEVMNLFNPVVQPQAFDQIQISIASPEKILSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLSRVRRERMGHISLAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERILYFESYIVLDPGLTPLKDRQLLNEEDHLRAQDEYGQDSFTA
MIGAEAIREILRNMDLPAIAERLKIEIAQSTTELKPKKLAKRLKIIEAFMHSGNKPEWMI
LTEVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PDLKLHQCGLPKKMALELFKPFIYSRLDAKGLSATVKQAKKLVEKEKPEVWDILDEVIRE
HPVMLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGLPIIVPSQDIVLGLYYVSLMRDGEPGQGMAFSNIGEVEHAIH
AKAVTLHTKIKGRAWTYDSEGKRQAKIFETTPGRLILGQLMPKHPKIPFDVVNKLMTKKE
ISNMIDVVYRNCGQKETVIFCDRIMALGFREAFKAGISFGKDDMVVPETKPKIIADTSAL
AKEYEQQYNDGLITQGEKYNKVVDAWAKCSDKLAEEMMARISAVHKDDAGRDKPINSIYM
MSHSGARGSPTQMKQLAAMRGLMAKPSGEIIESPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDSIITMVNCGSKGGIRMRAILDAGQVVASLAIRILGRTT
AEDLKDLDGEIIVSAGEMIQEWHIDRINAAGIQEVKIRSVLTCEAKNGVCGTCYGRDLAR
GTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQIADQSFVESNFDGVIRIRNRHLS
RNTDGDLMVMARNVAVVIEGPDGAERAVHRVQYGARMKVDEGDQIRRGQRIAEWDPYTRP
ILTEIDGVIGFEDLVEGASMTETIDEATGIAKRMVIDWRLNQRSATLKPAIVIKGSDGKI
GKLQRGGDARYPLPVESIIGVDPGGTVRAGDIIARISMDSAKTRDITGGLPRVAELFEAR
RPKDHAIIAEASGTVQFGRDYKNKTRIAIIPNEEDAEPIEYLIPKGKHIHLQDGDVVEKG
DYIVDGNPAPHDILAIKGVEELAAYLVNEIQEVYRLQGVAINDKHIEVIVRQMLQKVDIV
DPGDTDFLANEQVDQVELDAANTKALEEGGKPATSTPVLLGITKASLQTRSFISAASFQE
TTRVLTEAAVNGKADTLEGLKENVIVGRLIPAGTGAAMAKLKRVALMRDELILAQKSASA
AETPVPLLPPAEAAPQE
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaagaggtcatgaatctcttcaatccggtcgtgcagccgcaggcgttcgaccag
attcagatatcgatcgccagtccggagaagattctgtcctggtcgttcggcgagatcaag
aagcccgagacgatcaactaccgcaccttcaagccggagcgcgacggtctgttctgcgcg
cgcatttttggtccgatcaaggactatgagtgcctgtgcggcaagtacaagcggatgaaa
tataagggcgtcatctgcgagaaatgcggagtcgaggtcacgctgtcgcgcgtccggcgc
gaacgcatgggccatatttccctggccgctcccgtggcgcatatctggtttctgaaatcg
cttccctcgcgcatcgggcttttgctcgacatgacgctgaaggatctcgagcgcattctc
tatttcgaatcctacatcgtgctcgaccccggcctgacgccgctgaaggaccgccagctc
ctgaacgaggaggatcatctccgcgcgcaggatgaatatggtcaggattccttcacggcg
atgatcggcgccgaggcgatccgcgagatcttgcgcaatatggatctgccggcgatcgcc
gagcggctcaagatcgagatcgcgcaatcgacgacggagctgaagccgaagaagctggcg
aagcgcctgaagatcatcgaagccttcatgcattccggcaacaagccggagtggatgatc
ctgaccgaagtgcccgtcattccgccggacctgcgcccgctggttccgctggacggcggc
cgcttcgcgacctccgatctcaacgatctctaccgccgcgtcatcaaccgcaacaaccgg
ttgaagcgcctcatcgaattgcgcgcgccggacatcatcgtgcgcaatgagaagcgcatg
ttgcaggaggcggtcgacgcgctgttcgacaacggccggcgcgggcgcgtcatcaccggc
gccaacaagcgcccgctgaagtcgcttgccgacatgctgaaaggcaagcagggccgcttc
cgccagaatctgctcggcaagcgcgtcgattattcgggccgctcggtcatcgtcgtcggt
ccggatctgaagctgcatcaatgcggcctgccgaagaagatggcgctcgaactgttcaag
ccgttcatctattcgcgtctcgacgccaagggcctgtccgccaccgtcaagcaggcgaag
aagctggtcgagaaggaaaagcccgaagtttgggacatcctcgacgaggtgatccgcgag
catccggtgatgctgaaccgcgccccgaccttgcaccgcctcggcatccaggccttcgag
ccgaagctgatcgagggcaaggcgatccagctgcatccgctcgtctgcgccgccttcaac
gcggatttcgacggcgatcagatggctgtccatgtgccgctgtcgctggaggcgcagctt
gaggcgcgcgtcctcatgatgtcgaccaacaacatcctgcatccggccaatggtctgccg
atcatcgtgccgagccaggatattgtgcttggcctctattatgtctcgctgatgcgcgac
ggcgagcccgggcagggcatggccttctcgaatatcggcgaagtcgagcacgccattcac
gccaaggcggtcaccctgcacaccaagatcaagggcagggcctggacctatgacagcgag
ggcaagcgccaggcgaaaatcttcgagacgacgcccggccgcctgatccttggccagctg
atgccgaagcaccccaagattccgttcgacgtcgtgaacaagctcatgacgaagaaggaa
atctcgaacatgatcgacgtcgtctaccgcaactgcggtcagaaggagacggtcattttc
tgcgaccgcatcatggcgctcggattccgcgaggcgttcaaggccggcatttcgttcggc
aaggacgacatggtggtgccggagacgaagccgaagatcatcgccgacaccagcgcgctc
gcgaaggaatatgagcagcagtacaatgacggcctgatcacacagggcgaaaaatacaac
aaggtcgtcgacgcctgggcgaaatgctcggacaagctcgccgaagaaatgatggcgcgc
atttccgccgttcataaggacgacgctggccgcgacaagccgatcaactcgatctacatg
atgtcgcattccggagcgcgcggttcgccgacgcagatgaagcagctcgccgccatgcgc
ggcctgatggccaagccttcgggcgagatcatcgagagcccgatcatctcgaacttcaag
gaaggcctcaccgtgctcgagtacttcaactcgacgcatggcgctcgtaaaggtcttgcc
gacacggccttgaaaaccgcgaactcgggctatctgacgcgtcgtctcgttgacgtcgcg
caggattcgatcatcaccatggtcaattgcggctcgaagggcggcatccgcatgcgcgcc
attcttgacgcgggccaggttgtggcatcgctcgcgatccgcattctcggccgcacgacg
gccgaggacctgaaagatctcgacggcgagatcatcgtctccgccggcgagatgatccag
gaatggcacatcgaccgcatcaacgccgccggcattcaggaggtgaagatccgctcggtg
ctgacctgtgaggccaagaacggcgtctgcggcacctgctatggccgcgacctcgcgcgc
ggcacgccggtcaacatgggcgaggccgttggcgtcatcgcggcgcagtcgatcggcgag
ccgggcacccagctcaccatgcgcaccttccacatcggcggcgcggcgcagatcgcggat
caatccttcgtcgaatccaatttcgatggcgtgatccgcatccgcaaccggcatctgtcc
cgcaacaccgacggcgatctcatggtcatggcgcgtaacgtcgccgtggtcatcgagggg
ccggacggcgccgagcgggcggttcatcgcgtgcaatatggggcgcgcatgaaggtcgat
gagggcgatcagattcggcgcggccagcgcatcgccgaatgggatccctatacgcggccg
atcctcaccgagatcgacggcgtcatcggcttcgaggatctcgtcgagggcgcttcgatg
accgagacgatcgacgaagcgacgggcatcgccaagcgcatggtcatcgactggcgcttg
aaccagcgctcggcgaccctgaagccggcgattgtgatcaagggctccgacgggaagatc
ggcaagctgcagcgcggcggcgacgcgcgttatccgctgccagtcgaatcgatcatcggc
gtcgatccgggcggcacggtgcgcgcgggcgacatcatcgcccgcatctcgatggactcg
gcgaagacgcgcgacatcaccggcggtctgccgcgcgtcgccgaattgttcgaggcgcgg
cgcccgaaggatcacgcgattatcgccgaggcgtcggggacggtccagttcgggcgcgac
tataagaacaagacccgcatcgcgatcatcccgaatgaggaagacgccgagccgatcgaa
tatctgatcccgaaaggcaaacacatccatcttcaggacggcgatgtggtcgaaaagggc
gattatatcgtcgacggcaatcctgcgccgcacgacatcctggccatcaagggcgtcgaa
gagctcgccgcctatctcgtcaatgagatccaggaggtctatcgcctgcagggcgtcgcc
atcaacgataagcatatcgaggtgatcgtccggcagatgctgcagaaggtggatatcgtc
gatccgggcgacaccgacttcctcgccaacgagcaggtcgatcaggtcgaactcgacgcc
gccaacaccaaggcgctggaggagggcggcaagccggccacctcgacgccggttctgctt
ggcatcaccaaggcgtcgctgcagacgcggtccttcatctccgccgcctccttccaggag
acgacgcgcgtcctgaccgaagccgccgtcaacggcaaggccgatacgctcgaagggctt
aaggaaaatgtgatcgtcggacggctgatcccggccggcactggcgcggccatggcgaag
ctgaagcgagtcgccttgatgcgcgacgagctgatcctggcgcaaaagagcgcgagcgcg
gccgagacgcccgtgccgctgctgcccccggccgaggccgcgccgcaggaatag
DBGET
integrated database retrieval system
