Mycolicibacterium smegmatis MC2 155: MSMEG_1327
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Entry
MSMEG_1327 CDS
T00434
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
msm
Mycolicibacterium smegmatis MC2 155
Pathway
msm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
msm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
MSMEG_1327 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msm03400
]
MSMEG_1327 (recB)
Enzymes [BR:
msm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
MSMEG_1327 (recB)
DNA repair and recombination proteins [BR:
msm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
MSMEG_1327 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
AAA_30
UvrD_C_2
Motif
Other DBs
NCBI-ProteinID:
ABK70050
UniProt:
A0QS29
LinkDB
All DBs
Position
complement(1422085..1425336)
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AA seq
1083 aa
AA seq
DB search
MKVFDLLGPLPAPNTTTVLEASAGTGKTFALAGLVTRFVAEGVATLDQMLLITFGRAASQ
ELRERVRAQIVAALVALDDPSRACNDLEEYLVKTDQQARRRRLRDALAGFDAATIATTHQ
FCQIVLKSLGVAGDSDAGVTLVESLDDLVSEIVDDLYLAHFGGQKDDPELSYPEALKLAR
VVVGNPATQLRPRDPDPDSPAAVRLKFARDVLAELEIRKRRRGVLGYDDLLTRLADALEP
EDSPARVRMQQRWPIVMVDEFQDTDPVQWQVIERAFSGRSTLVLIGDPKQAIYAFRGGDI
ATYLRAAATAGDKQTLGTNWRSDRALVDRLQAVLRGAQLGGPDIVVHDVQARHQGHRLVG
APRNDPFRLRVVSRKPGNTRVIPIDQLRRHIGRDLAADISALLNSGATWCDQPVQAKDIA
VITETHKDARACHAALLAAGIPAVYTGDSDVFTSEAAEDWLYLLEAFDQPHRPGLVRAAA
ATMFFGETAESLAAGGDALTDRVADTLREWAGHARERGVAAIFEAAQLAGMGKRVLSWQG
GERLMTDLAHMTQLLQDTAHREGFGLAALRDWLRTQRSERGGESERNRRLDSDAAAVQIM
TVWVSKGLQFPVVYLPFAFNRYVPEPDLVLFHDDGQRCLHVGGADPAVARAGRAEAAGDD
SRLTYVALTRAQSQVVAWWAPSYDEPNGGLSRLMRGRAPGEAIVPDKCSPPKISDEDALE
RLRAWEAAGGPVIEESVIGAVSPVPPEPAPEDLAARKFFRAIDMAWKRTSYSGLLRAAET
AGVGVSSEPEVTERDDEFDDIPVVAPAEGADVPSPMAHLPTGAAFGSLVHAVLETADPFA
EDLTAELATHIDAHSQHWPVEVETAELAAALVPMHDTPLGPLAPGLTLRQIGLRDRLCEL
DFEFPMAGGDLRGGRFARLSDVGELLREYLPADDPLAVYAERLSTGILGVQPLRGYLSGS
VDAVLRVGEKFVIVDYKTNWLGTGDGTLTAADYGRRRMVEAMLHSDYPLQALLYAVVLHR
YLGWRLSGYDPATHLGGVLYLFVRGMCGAGTPVVDGHPAGVFSWEPPADLVVALSKLLDA
EAP
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
gtgaaggttttcgatctgctcggcccgctgcccgcaccgaacaccaccacggtgctggag
gccagcgcgggcaccggcaagacgttcgcgctggccggtctggtcactcgttttgtcgcc
gagggcgtcgcgacgctcgaccagatgctgctcatcacgttcggccgcgccgccagccag
gaactgcgcgagcgtgtgcgcgcccagatcgtcgccgcgctcgtcgcgttggacgacccg
tcgcgggcctgcaacgacctggaggaatacctggtcaagaccgaccagcaggcgcggcgc
cggcgcctgcgcgacgcgctggccgggttcgacgccgccaccatcgcgaccacgcaccag
ttctgccagatcgtgctgaaatctcttggcgtggctggggactccgacgccggggtgacc
ctcgtggagagcctcgacgacttggtctccgagatcgtcgacgatctgtatctcgcgcac
ttcggcgggcagaaggacgatcccgagctcagctatcccgaggccctcaagctcgcgcgc
gtcgtcgtcggcaacccggccacccaactgcgcccgcgcgacccggaccccgattccccc
gccgcggtgcgcctgaagttcgcgcgggatgtgctcgccgagttggagatccgcaagcgt
cggcgcggcgtgctcggctacgacgatctgctgacccggctggccgatgcactcgaaccc
gaggactccccggcgcgcgtgcgcatgcagcagcgctggccgatcgtgatggtcgacgag
ttccaggacaccgatcccgtgcagtggcaggtgatcgagcgcgcgttctcggggcggtcg
acgctggtgctcatcggtgatcccaagcaggcgatctacgcgttccgcggtggcgacatc
gcgacgtacctgcgggccgccgcgacggccggtgacaagcagacgctgggcaccaactgg
cgcagcgaccgcgcactggtggaccgcctgcaggccgtgctgcgcggcgcacaactcggc
ggacccgacatcgtggtgcacgacgtgcaggcacgccatcaggggcaccgcctggtgggc
gcaccgcgcaacgacccgttccggctgcgcgtggtgtcacgaaaacccggcaacaccagg
gtgatcccgatcgatcagctgcgccgccacatcggccgggatctcgcggccgacatctct
gccctgctgaacagcggggccacgtggtgcgaccaaccggtccaggcgaaggacatcgcg
gtcatcaccgagacccacaaggacgccagggcgtgtcatgcggcgctgctcgcggcgggc
attcccgcggtctacaccggggattcggatgtgttcacctccgaggccgccgaggactgg
ctgtacctgctcgaggcgttcgaccagccgcaccggccgggtctggtgcgcgccgcggcc
gccaccatgttcttcggcgagaccgcggaaagccttgccgcgggcggcgatgcgctcacc
gaccgggtcgccgacacgctgcgtgaatgggcggggcatgcccgtgagcgcggtgtcgcc
gcgatcttcgaggccgcgcaactcgccggtatgggcaagcgtgtgctgtcgtggcagggc
ggtgaacggttgatgacggatctcgcccacatgacccagttgctgcaggacaccgcacac
cgcgagggcttcgggctggccgcgctgcgcgactggctgcgcacgcagcgctcggagagg
ggcggcgaatcggaacgcaaccgtcgtctcgacagtgacgccgcggccgtgcagatcatg
accgtgtgggtgagcaagggtctgcagttcccggtcgtctacctgccgttcgcgttcaat
cgctatgtgcccgagccggatctggtgttgttccacgacgacgggcagcgctgcctgcat
gtcggcggagccgatccggcggtcgcccgcgcggggcgtgccgaggccgcgggcgacgac
agccgtctcacctacgtcgcactgacccgcgcccagtcgcaggtggtggcgtggtgggca
ccgtcgtacgacgaacccaacggcggcctgtcgcggctgatgcgcggccgcgctcccggg
gaggcgatcgtccccgacaagtgctcaccacccaagatctccgatgaggatgcgctggaa
cggttgcgggcgtgggaggcagccggtgggccggtgatcgaggaatcggtgatcggtgcg
gtcagcccggtgccacccgagcccgcgcccgaggatctggcggctcgcaagttctttcgc
gcgatcgacatggcgtggaagcgcacgtcctattcggggctcttgcgcgcggcagagacc
gcgggtgtcggggtgtcgagcgaacccgaggtcaccgaacgcgacgacgagttcgacgac
attcccgtggtcgccccggccgagggtgccgacgtgccctctcccatggcacacctgccg
acgggcgcggcgttcggttcgctcgtgcacgccgtgctggagaccgccgatccgttcgcc
gaggatctgaccgccgaactcgcgacgcacatcgacgcccactcccagcactggccggtc
gaggtcgagacggccgaactcgcggccgcgctcgtgcccatgcacgacaccccgctgggg
ccgttggcgccgggtctcacgctgcggcagatcggtctacgggaccggttgtgtgagttg
gatttcgagtttcccatggccggtggcgatctgcgtggtggacggttcgcacggttgtcg
gacgtcggtgagctgctgcgtgagtacctgcccgccgacgacccgctggcggtgtacgcc
gagcggttgtccacgggcatcctcggggtgcagccgctgcgcgggtatctgtcggggtcg
gtcgacgcggtgctgcgggtcggcgagaagttcgtcatcgtcgactacaagacgaactgg
ctgggcaccggcgacggcacgttgaccgcggccgactacgggcgccgccgcatggtcgag
gccatgttgcattccgactatccgctgcaggccctgctgtatgcggttgtgctgcaccgg
tacctgggctggcggctgtcgggctacgacccggcgacgcatctcggtggtgtgctgtat
ctgttcgtacgtggcatgtgcggggccgggacgccggtcgtcgacgggcacccagccggg
gtgttcagctgggaaccgcctgccgatctggtcgtcgcattgtcgaagctgttggatgcg
gaggcgccgtga
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