Mycolicibacterium smegmatis MC2 155: MSMEG_4954
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Entry
MSMEG_4954 CDS
T00434
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
msm
Mycolicibacterium smegmatis MC2 155
Pathway
msm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSMEG_4954 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msm03021
]
MSMEG_4954 (rho)
03019 Messenger RNA biogenesis [BR:
msm03019
]
MSMEG_4954 (rho)
Transcription machinery [BR:
msm03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
MSMEG_4954 (rho)
Messenger RNA biogenesis [BR:
msm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
MSMEG_4954 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
Spore_III_AA
NACHT
AAA_22
S1CSD-TOTE-2
VWA_2
Motif
Other DBs
NCBI-ProteinID:
ABK73380
UniProt:
A0R218
LinkDB
All DBs
Position
complement(5049428..5051422)
Genome browser
AA seq
664 aa
AA seq
DB search
MTETDLFTADNASDTGDLSGAVKSNTAPRARSASLSTMVLPELRALAKEIGVEGASGLRK
SELIAAIRAHRGESNGRTAEASSPATADAQTGEQAAEAPAPRRRERRASTRQAGAPVAEK
GEAGEKAGEKTEAQPEAKTEAQPEAKAEAPAEAKTERAEKADKPAKEAQTKAAEAPEAGE
SQESQPRQRRERSGRQDRADRGEKDGQDGKQDQGKQDRSERDQDQQGGGQQNRGGGSGNN
ADSDDDGEGRQGRRGRRFRDRRRRGERGGEGGNDTELREDDVVQPVAGILDVLDNYAFVR
TSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAVRVPREGDSGGQNQRQKFNPLVRLDTVN
GGSVEDAKKRPEFGKLTPLYPNERLRLETSPERLSTRVIDLIMPIGKGQRALIVSPPKAG
KTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTQAA
ELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGA
ARNIEHGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPS
GTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLISQLRKTKTNYEFLVQVSKTAPGS
MDVD
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
gtgactgaaacggacctcttcacagctgacaatgccagcgacactggcgatttgtcgggt
gctgtgaaatcgaacaccgcgccgcgcgcccggtccgcgtcgctttcgacgatggtgttg
ccggagctgcgcgcgcttgccaaggaaatcggtgttgaaggtgcgtccggtctgcgcaag
agtgagctgatcgccgccattcgcgcccaccgaggcgaatccaacggccggaccgctgag
gccagcagcccggcgaccgccgacgcccagaccggcgagcaggccgccgaggcgcccgcc
ccgcgtcgtcgcgagcgtcgtgcgtccacccgccaggccggcgctcctgtcgccgagaag
ggtgaggccggcgaaaaggccggcgaaaagaccgaggcgcagcccgaggccaagaccgag
gcgcagcccgaagccaaggccgaagctcctgccgaagccaagaccgaacgtgccgaaaag
gccgacaagcccgccaaggaagcccagaccaaggctgccgaggcacccgaggccggcgag
tcccaggagtcccagccccgtcagcgccgtgagcgttccggcaggcaggaccgcgccgac
cgtggcgagaaggacggccaggacggcaagcaggaccagggcaagcaggaccgttccgag
cgtgaccaggaccagcagggtggcggccagcagaaccgcggtggcggttcgggcaacaac
gccgattccgacgacgacggcgagggccgccagggccgtcgcggccgccggttccgtgac
cgccgcaggcgcggtgagcgcggcggcgagggtggcaacgacaccgagctgcgcgaggac
gacgtcgtgcagcccgtcgcgggcatcctcgacgtcctggacaactacgcgttcgtgcgg
acctcgggctacctggccgggccgaacgacgtgtacgtctcgatgaacatggtgcgcaag
aacggcctgcgccgcggcgacgccgtgaccggtgccgtgcgcgtgccgcgtgaaggcgac
agcggcggccagaaccagcgccagaagttcaacccgctggtgcgtctggacaccgtcaac
ggcggctcggtcgaggacgccaagaagcgccccgagttcggcaagctcacgccgctgtac
ccgaacgagcggctgcggctggagaccagccccgagcgtctctcgacgcgtgtgatcgac
ctgatcatgccgatcggcaagggtcagcgcgccctgatcgtgtcgccgcccaaggccggt
aagaccacgatcctgcaggacatcgccaacgcgatcacccgcaacaaccccgaatgccac
ctgatggtcgtgctcgtcgacgagcggcccgaagaggtgaccgacatgcagcggtcggtg
aagggcgaggtcatcgcctcgacgttcgaccgcccgccgtcagatcacacgcaggccgcc
gagctggccatcgagcgcgccaagcgcctcgtggagcagggcaaggacgtcgtggtgctg
ctggactcgatcacccgcctgggccgtgcgtacaacaacgcctcgcccgcgtcgggccgc
atcctgtctggtggtgtcgactccaccgcgctgtacccgcccaagcgcttcctcggcgcc
gcccgcaacatcgagcacggcggctcgttgaccatcatcgcgaccgccatggtcgagacc
gggtcgaccggtgacaccgtcatcttcgaggagttcaagggcaccggtaacgccgagctc
aagctggaccgcaagatcgccgagcgccgggtgttcccggccgtcgacgtcaacccgtcc
ggcacccgcaaggacgagctgctgctgtccccggacgagttcgcgatcgtgcacaagctg
cgtcgcgtgttgagcgggctggattcccaccaggccatcgacctgctgatcagccagctg
cgcaagaccaagaccaactacgagttcctggtccaggtgtccaagacggcccccggctcg
atggacgtcgactga
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integrated database retrieval system
