Mycolicibacterium smegmatis MC2 155: MSMEG_6587
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Entry
MSMEG_6587 CDS
T00434
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
msm
Mycolicibacterium smegmatis MC2 155
Brite
KEGG Orthology (KO) [BR:
msm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msm03019
]
MSMEG_6587 (hrpA)
Enzymes [BR:
msm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MSMEG_6587 (hrpA)
Messenger RNA biogenesis [BR:
msm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MSMEG_6587 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
nSTAND_NTPase5
WHD_HA2
T2SSE
nSTAND3
NACHT
ABC_tran
MreB-like_C
SLFN-g3_helicase
PhoH
Motif
Other DBs
NCBI-ProteinID:
ABK70817
UniProt:
A0R6L2
LinkDB
All DBs
Position
complement(6641661..6645611)
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AA seq
1316 aa
AA seq
DB search
MSERQELRELRARLDGLTIRDAARLGRRLKNLRGDDLTKNFAKIEQQIAQAEALVLTRQA
AVPQITYPDLPVTQRRDDLAKAIAENQVVVVAGATGSGKTTQLPKICLELGRGIRGTIGH
TQPRRLAARTVAQRIADELGTPLGEAVGYTVRFTDQASDSTLVKLMTDGILLAEIQRDRR
LLRYDTLILDEAHERSLNIDFLLGYLRELLPRRPDLKVIVTSATIEPERFSRHFGDAPIV
EVSGRTYPVEIRYRPLEVPAPTSDDEDPDDPDHEIVRTEVRDPTEAIVDAVRELEAEPPG
DVLVFLSGEREIRDTAEALKDLRNTEVLPLYARLPTAEQQKVFQPSHAGRRVVLATNVAE
TSLTVPGIRYVVDPGTARISRYSRRTKVQRLPIEPISQASAAQRAGRSGRTAPGVCIRLY
SEEDFESRPRYTDPEILRTNLAAVILQMSALGLGDIENFPFLDPPDARSIRDGIQLLQEL
GAFDTSSAAGGGNSASAAGGGNSVPALTETGRRLARLPLDPRIGRMILQADAEGCVREAL
VLAAALSIPDPRERPSDREEAARQKHARFADEHSDFISYLNLWNYLREQRNELSGNAFRR
MCRDEFLHYLRIREWQDLVGQLRSIARDIGIRESDEPADPARIHAALTAGLLSHVGLREG
DTRDYTGARNTKFVLAPGSVLTKKPPRWIVVADLVETSRLFGRIAARIEPEAVERVAGHL
VQRTYSEPHWDARRGAVMASERVTLYGLPLVPRRRVNYAQIDPVVSRELFIRHALVEGEW
QTRHHFFRDNARLREEVEEMEERARRRDLLVGDDEIFALYDARIPADVVSARHFDAWWKK
QRHKTPDLLTFTREDLLRTDDAADHPDTWRAGDLELPLSYRYQPGAADDGVTVHVPVGVL
ARLGGENFAWQVPALREELVTALIKSLPKDLRRNFVPAPDTARAILPHLDPGTGSLLDAV
QRELRRRTGILVPVDAFDLDKVPPHLRVTFAVENSDGAEVARGKDIETLREQLAVPVAQA
VAEAVDDGLQRTGLRAWPDDLDELPRTVENVSGGHTVRGYPGFVDTGKAVDIRVFANPIE
RDAAMGPGLRRLLRLSVPSPVKAIERGLGTRTRLALNANPDGNLAALLEDCADAAADTLV
RQIVWTRADFTVLVQRAAKELGATTQAAVTRVEKVLAAAHEVGVALPDKPPAAQVDAVED
IRLQLERLLPKGFVTATGVARLTDLTRYVTAIARRLERLPHAIGADRERMARVHAVEDAY
DDLVRALSPARAAAHDVSAIAWQIEELRVSLWAQQLGTPRPVSEQRIYKAIDAVAR
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
gtgtcggaacgtcaggaactgcgtgagctgcgtgcgcgtctcgacggactgaccatccgc
gacgcggcgcgactcgggcgtcgcctcaagaacctccgcggcgacgatctcaccaagaac
ttcgccaagatcgagcagcagatcgcccaggccgaggcgctggtgctcacacgccaggcc
gcggtcccgcagatcacctaccccgacctgcccgtcacgcaacgccgcgacgacctcgcg
aaagccatcgccgagaaccaggtggtcgtcgtcgcgggcgccaccggatccggcaagacc
acccagctgcccaagatctgcctcgagctcggccgcggcatccgcggcaccatcggccac
acccagccgcgccggctcgcggcgcgcacggtggcgcagcgcatcgccgacgagctcggc
acaccgctcggcgaggccgtcggctacaccgtgcggttcaccgaccaggccagcgactcc
acactggtcaaactcatgactgacggcatcctgctcgccgagatccagcgcgaccgcagg
ttgctgcgctacgacaccctgatcctcgatgaggcccatgaacgcagcctcaacatcgac
ttcctgctcgggtatttgcgtgagctgctgccgcgccggcccgacctcaaggtgatcgtc
acgtcggcgaccatcgaacccgaacgtttctcacggcacttcggcgacgcgcccatcgtc
gaggtgtcgggacgcacgtatcccgtcgaaatccgttaccggccactggaagtcccggcg
ccgacatccgacgacgaggatcccgacgatcccgaccacgagatcgtgcgcaccgaggtc
cgtgatcccaccgaggccatcgtcgacgcggtccgcgagctcgaggccgaaccgcccggc
gacgtcctggtgttcctctccggcgagcgtgagatccgcgacaccgcagaggctttgaaa
gacctgcggaacaccgaggtgctgccgttgtacgcgcggctgccgaccgccgagcagcag
aaggtgttccagcccagccatgccggccggcgcgtggtgctggccaccaacgtcgccgag
acctccctgaccgtgccgggcatccgctacgtcgtcgaccccggcaccgcgaggatctcg
cgctacagcaggcgcaccaaggtgcagcggctgcccatcgagcccatctcgcaggcctcg
gcagcgcagcgcgcgggccggtccgggcgtaccgcgcccggcgtgtgcatccggctgtac
tcggaggaggacttcgaatcacggccccgctacaccgatcccgagatcctgcggaccaac
ctggccgcggtgatcctgcagatgagcgcgctcggactcggcgacatcgagaacttcccg
ttcctcgacccgcccgacgcgcgcagtatccgcgacggcatccagttgttgcaggaactc
ggtgcgttcgacacttcttccgccgccggaggcggcaattcggcttccgccgccggaggc
ggcaattcggtcccagcgctcaccgagaccgggcgccggcttgcgcgcctgccgctcgac
ccgcgcatcggccggatgatcctgcaggccgacgccgagggctgcgtacgcgaggcgctg
gtgctcgccgcggcgctgtccatccccgatccgcgcgaacgcccgtcagaccgcgaggag
gccgcgcggcagaagcacgcccgcttcgccgatgagcactcggacttcatctcgtacctg
aacctgtggaactatctgcgcgagcagcgcaacgaattgtcgggcaacgctttccgccgc
atgtgccgcgacgagttcctgcactaccttcggatccgcgagtggcaggacctggtgggc
cagttgcgcagcattgcgcgtgacatcgggatccgcgagtccgacgagcccgccgacccg
gcccgcatccacgccgcgctcaccgcgggtctgctgtcacatgtcggcctgcgcgagggc
gacacccgcgactacaccggcgcgcgcaacaccaagttcgtgctcgcgccgggatcggtg
ctcacgaagaagccgccgcgctggatcgtggtggccgatctggtggagaccagcaggctg
ttcggccgtatcgcggcgcgcatcgaacccgaggcggtcgaacgcgtcgccgggcacctc
gtgcaacgcacgtacagcgaaccgcattgggacgcacgccgtggcgcggtgatggcctcc
gaacgcgtgacgctctacggtcttccgctggtcccgcgccgccgcgtcaactacgcgcag
atcgatccggtggtgagccgcgaactgttcatccggcacgccctggtcgagggcgagtgg
cagacgcgccaccacttcttccgcgacaatgcccgcctgcgcgaagaggtcgaggagatg
gaggagcgtgcgcggcgccgcgacctgctggtcggcgacgacgagatcttcgcgctgtac
gacgcgcgcatccccgccgacgtcgtctcggcgcgccacttcgacgcgtggtggaagaag
cagcgccacaagacccctgacctcctcaccttcacgcgtgaggacctgctgcgcaccgac
gacgccgccgaccatccggacacgtggcgggccggggacctggaactgccgctgagttac
cggtaccaacccggcgcggccgacgacggggtgaccgtgcacgtgccggtcggtgtgctc
gcacgcctgggcggagagaacttcgcgtggcaggtaccggccctgcgcgaggaactggtc
actgcgctcatcaagtcgctgccgaaagacctgcgccgcaacttcgtccccgcaccggac
accgctcgcgcgatcctgccgcacctcgacccgggaacgggatcgctgctcgacgccgtg
cagcgcgaactgcgcaggcgcaccggaatcctggtgcccgtcgacgcgttcgatctcgac
aaggtgccgccacacctgcgggtgacgttcgcggtggagaactccgacggcgccgaggtg
gcccgcggcaaggacatcgagaccctgcgcgaacaactcgcggtgccggtggcccaggcg
gtcgccgaggccgtcgacgacggtttgcagcgcacgggtctgcgagcttggcccgatgat
ctcgacgagttgccccggaccgtggagaacgtcagcggagggcacaccgtgcgcggatac
cctggcttcgtcgacaccggaaaagccgtggacatccgggttttcgcgaacccgatcgag
cgcgacgccgcgatgggaccggggctgcggcggcttctgcggctgagcgtgccgtcgccg
gtcaaggccatcgagcgggggttgggcacgcggacacggctggcgctcaacgcgaacccc
gacggcaacctcgccgccctgctcgaggactgcgcggacgcggccgccgacaccctggtg
cgccagatcgtctggacgcgtgccgatttcaccgtgttggtgcagcgcgcggcgaaggaa
ctcggcgccacgacgcaggccgcggtgacccgcgtcgagaaggtgctggccgccgcacac
gaggtcggggtggcgctgccggacaaaccgccggcagcccaggtcgacgcggtcgaggac
atccgtctgcaattggaacggttgctgcccaaggggtttgtcaccgcgacgggtgtcgcg
cggctgaccgacctcacccgctatgtcacggcgatcgcgcgccgcctcgagcggttgccc
cacgcgatcggcgccgaccgcgaacgcatggcgcgtgtgcatgccgtggaggacgcctac
gacgatctggtgcgggccttgtcaccggcacgcgcggcggcccacgatgtctcggcgatc
gcctggcagatcgaggaactgcgggtgagcctgtgggcgcagcaactcggcacgccgcgc
ccggtcagcgagcagcgcatctacaaggccatcgacgccgtcgcgcgctaa
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