Mycolicibacterium smegmatis INHR1: LI99_06820
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Entry
LI99_06820 CDS
T03409
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
msn
Mycolicibacterium smegmatis INHR1
Pathway
msn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
msn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LI99_06820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msn03021
]
LI99_06820
03400 DNA repair and recombination proteins [BR:
msn03400
]
LI99_06820
Enzymes [BR:
msn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LI99_06820
Transcription machinery [BR:
msn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LI99_06820
DNA repair and recombination proteins [BR:
msn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LI99_06820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AIU13232
UniProt:
A0A653FKG1
LinkDB
All DBs
Position
1465236..1469189
Genome browser
AA seq
1317 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVDDEMRHNELSTLEAEMAVEKKAVEDQRDADLEARAQKLEAD
LAELEAEGAKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL
YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQKKLRALKRLKVVA
AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ
AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLFENGWKPGDA
WTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAGF
YWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQDA
TEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVTL
AERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTVK
VRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVT
GGADIVGGLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYDK
LSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEVQ
EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGGE
PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP
AGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
gtgctagacgtcaacttcttcgatgaactccgcatcggtctcgcgaccgcggacgacatc
cgcaactggtcttacggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
cccgagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaagtacaagcgtgtccgcttcaagggcatcatctgtgagcgctgcggtgtc
gaggtgacccgcgccaaggtgcgccgtgagcggatgggccacatcgagctggccgcgcct
gtcacgcacatctggtacttcaagggtgtcccgtcgcgtctgggctacctgctggacctg
gccccgaaggatctggaaaagatcatctacttcgcggcctacgtgatcacctcggtcgac
gacgagatgcggcacaacgagctgtccacgctcgaagccgagatggccgtcgagaagaag
gccgtcgaggatcagcgcgacgccgacctggaggcccgcgcccagaagctcgaggccgac
ctggccgagctcgaggccgagggtgccaagtccgacgtgcgccgcaaggtgcgcgacagc
ggcgagcgcgagatgcgtcagctgcgcgaccgtgcccagcgtgagctggaccggctcgac
gagatctggaacaccttcaccaagctcgctcccaagcagctcatcgtcgacgaggtgctc
taccgcgagctgcaggaccgctacggcgagtacttcaccggcgccatgggcgcggagtcg
atcaagaagctcatcgagaacttcgacatcgacgccgaggccgagtcgctgcgcgaggtc
atccgcagcggcaagggccagaagaagctgcgtgcgctcaagcgcctgaaggtcgtcgcg
gccttccagcagtcgggcaactcgcccatgggcatggtgctcgacgccgttccggtgatc
ccgccggagctgcgcccgatggtccagctcgacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccggttgaagcgactgatcgacctc
ggtgcgcccgagatcatcgtcaacaacgagaagcgcatgctgcaggagtcggtggacgcg
ctgttcgacaacggccgccgtggccgcccggtcaccgggccgggcaaccgcccgctcaag
tcgctgtcggatctgctcaagggcaagcagggtcggttccgtcagaacctgctcggtaag
cgcgtcgactactcgggccgttcggtcatcgtggtcggcccgcagctcaagctgcaccag
tgcggtctgcccaagctgatggcgctcgagctgttcaagccgttcgtgatgaagcgcctg
gtcgatctgaaccacgcgcagaacatcaagagcgccaagcgcatggtcgagcgtcagcgt
ccgcaggtgtgggacgtgctcgaagaggtcatcgccgagcacccggtgctgctgaaccgc
gcacccacgctgcaccgccttggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagctgcacccgctggtgtgtgaggccttcaacgccgacttcgacggcgaccag
atggccgtgcaccttccgctgagcgcggaggcgcaggccgaggcccgcatcctgatgctg
tcgagcaacaacatcctgtccccggcgtccggcaagccgctggccatgccgcgtctggac
atggtgaccggtctgtactacctgaccaccctcgtcgagggtgcgaccggcgagtaccag
gccgccaccaaggatgctcccgagcagggcgtgtacagcagcccggccgaggccatcatg
gccatggaccgcggtgcgctgagcgtgcgcgccaagatcaaggtgcggctgaccgagctg
cgtccgccgaccgacctcgaggcgcagctgttcgagaacggctggaagccgggcgatgcg
tggaccgccgagacgaccctcggccgggtgatgttcaacgagctgctgccgaagagctat
ccgttcgtcaacgagcagatgcacaagaaggtccaggcccggatcatcaacgacctggcc
gagcgcttcccgatgatcgtggtggcgcagaccgtcgacaagctcaaggacgccggcttc
tactgggccacccgttcgggcgtcacggtctcgatggccgacgttctggtgccgccgcag
aagcaggagatcctggagcggcacgaggccgaggcggatgcgatcgagcgcaagtaccag
cgcggcgcgctgaaccacaccgagcgcaacgagtcgctggtcaagatctggcaggacgcc
accgaagaggtcggtaaggccctggaggagttctaccccgcggacaacccgatcatcacg
atcgtgaagtcgggcgccacgggtaacctcacccagacgcgcaccctggccggcatgaag
ggtctggtgaccaacccgaagggtgagttcatcccgcgtccgatcaagtcctcgttccgt
gagggcctgacggtgctggagtacttcatcaacacccacggtgcccgtaagggtctggcc
gacaccgctcttcgcaccgccgactcgggttacctgacccgtcgtctggtggacgtgtcg
caggacgtcatcgtccgcgagcacgactgcgagaccgagcgcggcatcaacgtcacgctg
gccgagcgcggcccggacggcacgctcatccgcgatgcgcacgtcgagacctcggcgttc
gcccgcaccctggccaccgatgcggtcgatgccaacggcaacgtcatcatcgaacgtgga
catgacctgggcgacccggccatcgacgcgctgctggccgccggtatcaccacggtgaag
gtccgctcggtgctgacctgcacctcggccaccggtgtgtgtgcgatgtgctacggccgc
tcgatggccaccggcaagctcgtcgacatcggcgaggccgtcggtatcgtcgccgcgcag
tcgatcggtgagcccggtacgcagctgaccatgcgtaccttccaccagggtggtgtgacc
ggtggcgccgacatcgtcggtggtctgccccgtgtgcaggagctgttcgaggctcgtgtg
ccgcggaacaaggcgcccatcgccgacgtcgcgggccgcgtgcgtctggaggagagcgac
aagttcttcaagatcaccatcgttcccgacgatggcggcgaagaggttgtctacgacaag
ctctcgaagcgtcagcgtctgcgcgtgatcacccacgaggacggcaccgagggtgtcctc
tccgacggtgaccacgtcgaggtcggcgaccagctgatggaaggcgccgccgatccgcac
gaggtgctgcgtgtccagggcccgcgcgaggtgcagatccacctcgtcaaggaggtccag
gaggtctaccgggcccagggcgtgtcgatccacgacaagcacatcgaggtcatcgtccgg
cagatgctgcgtcgcgtcacgatcatcgattcgggctcgacggagttcctgcccggttcg
ctgaccgagcgtgccgagttcgaggcggagaaccgccgggtcgtcgccgagggtggcgag
cccgcggcaggccgtccggtgctgatgggtatcaccaaggcgtcgctggccaccgattcg
tggctgtcggcggcgtcgttccaggagaccactcgcgtgctgaccgatgcggcgatcaac
tgccgcagcgacaagctgaacggtctgaaggagaacgtgatcatcggcaagctgatcccg
gccggtaccggtatcagccgctaccgcaacatccaggtgcagccgaccgaagaggcccgt
gccgctgcgtacacgatcccgtcctacgaggatcagtactacagcccggacttcggccag
gccaccggtgccgcggtgccgctggacgactacggctactcggattaccgctaa
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