Mycolicibacterium smegmatis INHR1: LI99_14975
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Entry
LI99_14975 CDS
T03409
Name
(GenBank) sigma 54 type regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
msn
Mycolicibacterium smegmatis INHR1
Brite
KEGG Orthology (KO) [BR:
msn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
msn03000
]
LI99_14975
Transcription factors [BR:
msn03000
]
Prokaryotic type
Helix-turn-helix
Other families
LI99_14975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HTH_8
HTH_50
Xre-like-HTH
HTH_23
Sigma54_activat
TIP49
HTH_29
HTH_30
AAA_16
DUF134
UBA_At5g58720
HTH_Tnp_ISL3
TsaE
HTH_11
HTH_28
HTH_17
AAA_7
Motif
Other DBs
NCBI-ProteinID:
AIU14790
LinkDB
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Position
3076405..3078123
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AA seq
572 aa
AA seq
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MSTRRNEARIEDIRAQFLTASEPGRAVPADLLESWVRSKAALGTPANVRDVPQVDEDLLD
NHLVEMFQAPMARVAEDLGGSGMGLLLADAEGRILQRWSQDASAMSHLDRLGTVRGAVLA
EDTVGTNGVGTVIAAGKSVQIAGAEHFADIYRTAVCTGAPVWHPLSGKLLAVVTVSTMLS
ERSGLLVPLTNSVAAQLEQHVLDVAQPGARAMLAAFLESSARHAGPVVAFGPDGLTMRSR
RAGELTQTDVDTINHLCAGLRRDVQVTAELSVGPTVIDVAALDGGAGVVAALRPAPRSSA
AHSIASSSALVGQSKSWRAVAHRVSRHIATREPILVAGELGTGKTSLALGRPFSAGAADT
ATIVHGAERQIVGDQTWLQRVADAVEAGPVVIRGAEHVDGHVLAAVRTLIDGQRGTTPIV
LTMTAALRAEAESAAGRFGVPMVWVPPLRERVSDIGVLWNSFVAQCSPGARLPLADAARQ
ALEAAGWPGNLSDLRGAVDTVLASGKRGTVQVDDLPDTLRSRRTWTLMERTEIEAIRRAL
QEADGNRSKAAELLGVSRATIHRKMKTYHLSG
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgacacggcgcaacgaggcccgcatcgaggacatccgtgctcagttcctgacagcg
tccgagccgggccgtgccgtgccggccgatctgctggagtcgtgggtgcggtccaaggca
gccctggggacaccggcgaacgtccgcgacgtgccgcaggtggacgaggatctgctcgac
aaccacctggtggagatgttccaggcgcccatggcgcgggtcgccgaggatctcggtggc
tcgggtatgggcctgctgctggccgacgccgagggtcggatcctgcagcgctggtcgcag
gacgcatcggcgatgagccatctcgaccggctcggcacggtccgcggtgcggtcctggcc
gaggacacggtaggcaccaacggcgtcggcacggtgatcgcggctggcaagagcgtccag
atcgccggtgccgaacacttcgccgacatctaccgcaccgcggtgtgcaccggggcgccg
gtgtggcatccgctttcgggcaaactgctcgcggtggtgacggtgtcgaccatgctcagc
gaacgcagtggcctgctcgtgccgttgaccaactccgttgctgcgcaactcgaacagcat
gtgctcgacgtggcccagccgggcgcccgcgccatgctcgcggcgttcctggagtcctcg
gcccggcacgccggcccggtggtggccttcggccccgacgggctgacgatgcgcagccgc
cgcgccggcgagctcacgcagactgacgtcgacaccatcaaccatctgtgtgcggggctg
cgccgcgatgttcaggtgacggccgagttgtccgtgggcccgacggtcatcgacgtcgcc
gcactcgacggcggcgccggggtggtcgcggcgctgcgtccggccccgagatcgtcggcc
gcgcacagcattgcgtcgtcgtcggcgctggtggggcagtcgaagtcatggcgtgccgtc
gcgcaccgcgtcagcaggcacatcgccacccgcgaaccgattctggtggcgggggagtta
ggcaccggcaagacctcgctcgcgctcggccggccgttctcggccggcgcagcggatacc
gcgacgatcgtgcacggggccgaacggcagatcgtcggcgaccagacctggttgcagcgc
gtggccgacgcggtcgaggcgggcccggtggtgatccgcggggccgagcacgtcgacggc
cacgtcctggccgcggtccggaccctcatcgacgggcagcggggcacgaccccgatcgtg
ctcaccatgacggccgcgctcagggccgaggcggaatcggcggccggccggttcggggtg
cccatggtgtgggtgccgccgctgcgtgaacgtgtgtccgatatcggtgtgttgtggaat
tcctttgtcgcccagtgctcgccgggcgcgcgcctcccgctcgcggacgccgcgcgccag
gcgctggaggccgcggggtggccggggaacctgtcagacctgcgcggtgccgtcgacacc
gtgctggcgtcgggcaagcgcggcacggtgcaggtcgacgacctgcccgacaccctgcgc
agccgtcgcacctggacgctgatggagcgcaccgagatcgaggcgatccggcgggccctt
caggaggcagatggcaaccgatccaaggcggccgaactgctgggcgtgtccagggcgacg
atccaccggaagatgaagacgtaccacctttccggctga
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