Mycolicibacterium smegmatis INHR1: LI99_18925
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Entry
LI99_18925 CDS
T03409
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
msn
Mycolicibacterium smegmatis INHR1
Pathway
msn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LI99_18925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msn03400
]
LI99_18925
DNA repair and recombination proteins [BR:
msn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LI99_18925
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LI99_18925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_29
AAA_16
RsgA_GTPase
AAA_25
AAA_21
APS_kinase
DnaJ_CXXCXGXG
BCA_ABC_TP_C
Viral_helicase1
DUF1421
SRP54
ScfRs
Motif
Other DBs
NCBI-ProteinID:
AIU15553
LinkDB
All DBs
Position
complement(3878007..3880901)
Genome browser
AA seq
964 aa
AA seq
DB search
MADRLVVKGAREHNLRGVDLDLPRDALIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSA
YARQFLGQMDKPDVDFIEGLSPAVSIDQKSTNRNPRSTVGTITEVYDYLRLLYARAGTPH
CPVCGERIARQTPQQIVDQVLAMDEGLRFQVLAPVVRTRKGEFVDLFEKLNSQGYSRVRV
DGVVYPLTDPPKLKKQEKHDIEVVVDRLTVKASAKQRLTDSIETALNLADGIVVLEFVDR
EDDHPHREQRFSEKLACPNGHPLAVDDLEPRSFSFNSPYGACPECTGLGIRKEVDPDLVV
PDPELTLAEGAVAPWSVGQSAEYFTRMLAGLGEEMGFDVNTPWKKLPAKARRAILEGCDH
QVHVRYKNRYGRTRSYYADFEGVMAFLQRRMEQTDSEQMKERYEGFMRDIPCPECNGTRL
KPEILAVTLSAGDFGAKSIAQVAELSIADCADFLNSLTLGPREQAIAGQVLKEIQSRLGF
LLDVGLDYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLID
TLVRLRDLGNTLIVVEHDLDTIAHADWVVDIGPAAGEHGGQIVHSGTYDDLLRNPESLTG
AYLSGKESIEVPAIRRPVDKKRQITVVGARENNLKEIDVAFPLGVLTSVTGVSGSGKSTM
VNDILATVLANKLNGARLVPGRHTRVNGLDQLDKLVRVDQSPIGRTPRSNPATYTGVFDK
IRSLFAATTEAKVRGYQPGRFSFNVKGGRCEACSGDGTIKIEMNFLPDVYVPCEVCHGAR
YNRETLEVHYKGKTISEVLDMSIEEATEFFEPISSIHRYLKTLVDVGLGYVRLGQPAPTL
SGGEAQRVKLAAELQKRSTGRTIYILDEPTTGLHFEDIRKLLKVINGLVDKGNTVIVIEH
NLDVIKTSDWIIDMGPEGGAGGGTVVAQGTPEDVAANPDSYTGKFLAELLDVPTPKRKRR
KVSA
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
ttggctgaccgtcttgttgtcaagggtgcccgcgagcacaacctgcgtggtgtcgacctc
gacctgccacgcgatgccttgatcgtgttcaccggattgtccggttccggtaagtcctcg
ttggcgttcgacaccatcttcgccgagggccagcgccgctatgtggagtcgctgtcggcc
tacgccaggcagttcctcggccagatggacaaaccggacgtcgacttcatcgagggtctg
tcgcccgcggtgtcgatcgaccagaagtccaccaaccgcaacccgcggtcgacggtcggc
accatcaccgaggtctacgactacctccgtctgctgtacgcccgcgccggtacgccgcac
tgtccggtgtgcggtgagcgcatcgcgcggcagacgccgcagcagatcgtcgaccaggtg
ctcgcgatggacgaggggctgcggttccaggtgctcgcgcccgtcgtgcgcacgcgcaag
ggtgagttcgtcgacctgttcgagaagctcaacagccagggttacagccgtgtccgcgtg
gacggcgtggtgtatccgctgaccgacccgcccaagctcaagaagcaggagaagcacgac
atcgaggtggtcgtcgaccgcctcacggtcaaggcctccgccaaacagcggctcacggat
tcgatcgagaccgcgctgaacctcgccgacggcatcgtggtgctggagttcgtcgaccgc
gaggacgaccacccgcaccgcgagcagcggttctccgagaaactggcatgccccaacggt
cacccgctggccgtggacgacctcgaaccccgttcgttctcgttcaactcgccgtacggc
gcgtgccccgagtgcacgggcctgggcatccgcaaagaggtcgatcccgatctcgtggtg
cccgatcctgagctgacgctcgcggagggcgccgtcgcgccgtggtcggtgggccagagc
gccgagtacttcacgcgcatgctggcgggtctcggtgaggagatggggttcgacgtcaac
accccgtggaagaagcttcccgccaaggcgcgcagggcgatcctcgagggctgcgaccac
caggtgcatgtgcggtacaagaaccgttacggacgcacccggtcctactacgccgacttc
gaaggcgtcatggcgtttttgcagcgccgcatggagcagaccgactccgagcagatgaaa
gagcgctacgagggcttcatgcgcgacatcccctgcccggaatgcaacggcacgcgcctc
aagcccgagatcctcgccgtcacgctgtcggcaggggacttcggcgcgaagtccatcgcg
caggtcgccgaactgtcgatcgccgactgcgccgacttcctcaactcgctgacgctgggg
ccgcgcgagcaggccatcgcgggccaggtgctcaaggagatccagtcgcggctgggcttt
ttgctcgacgtggggctggactacctgtcgctctcgcgcgccgcggcgacgctgtccggc
ggtgaggcgcaacgcatccggctcgcgacccagatcggttcgggcctcgtgggcgtgctc
tacgtgctcgacgaaccgtcgatcggtctgcaccagcgcgacaaccgcaggctcatcgac
accctggtgcgcctgcgcgacctcggcaacacgctcatcgtcgtcgagcacgacctcgac
accatcgcgcacgccgactgggtcgtcgacatcggcccggccgcaggcgagcacggcggc
cagatcgtgcacagcggcacctacgacgatctgctgcgcaatcccgaatcgctcacgggc
gcatatctttccggcaaggagagcatcgaggttccggcgatccgccgtcctgtcgacaag
aagcggcagatcacggtggtcggcgcgcgggagaacaacctcaaggagatcgacgtcgcg
ttcccgctcggggtgctgacctcggtcaccggcgtgtcgggttcgggcaagtcgaccatg
gtcaacgacatcctggccacggtgctcgccaacaagctcaacggcgctcgcctggtgccg
gggcgtcacacccgcgtcaacgggctcgaccagctcgacaagctcgtgcgcgtggaccag
tcgcccatcgggcggaccccgcggtccaacccggcgacgtacacgggcgtgttcgacaag
atccggtcgctgttcgccgcgaccaccgaggcgaaggtccgcggctaccagccgggccgg
ttctcgttcaacgtcaagggcggccggtgcgaggcctgctcgggtgacggcaccatcaag
atcgagatgaacttcctaccggacgtctacgtcccgtgcgaggtgtgccacggcgcccgc
tacaaccgcgagacgctcgaggtccactacaagggcaagaccatctccgaggtcctcgac
atgtcgatcgaggaggcgacggagttcttcgagcccatcagctcgatccaccgctacctc
aagacgctggtcgacgtgggtctggggtacgtgcggctggggcagcccgcgccgacgctg
tccggtggtgaggcccagcgtgtcaagctggccgccgagctgcagaagcgctcgacgggt
cgcaccatctacatcctcgacgagcccaccactggcctgcacttcgaggacatccgcaag
ctgctcaaggtgatcaacggccttgtcgacaaaggcaacacggtcatcgtcatcgagcac
aacctcgacgtcatcaagacctccgactggatcatcgacatgggtccggaaggcggcgca
ggcggtggcaccgtggtcgcacagggcacacccgaggacgtcgcggccaacccggacagc
tacacgggcaagttccttgcggagttgctcgacgtacccaccccgaagcgcaagcggcgc
aaggtcagcgcctaa
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