Mycolicibacterium smegmatis INHR1: LI99_24360
Help
Entry
LI99_24360 CDS
T03409
Name
(GenBank) DNA-3-methyladenine glycosylase
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
msn
Mycolicibacterium smegmatis INHR1
Pathway
msn03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
msn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LI99_24360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
msn03000
]
LI99_24360
03400 DNA repair and recombination proteins [BR:
msn03400
]
LI99_24360
Enzymes [BR:
msn01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
LI99_24360
Transcription factors [BR:
msn03000
]
Prokaryotic type
Helix-turn-helix
AraC family
LI99_24360
DNA repair and recombination proteins [BR:
msn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LI99_24360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
HHH
Methyltransf_34
UBA_6
DUF6233
Motif
Other DBs
NCBI-ProteinID:
AIU16594
LinkDB
All DBs
Position
5019965..5021452
Genome browser
AA seq
495 aa
AA seq
DB search
MHEDFDRCYRAVQSKDARFDGWFVTAVLTTGIYCRPSCPVRPPLARNLRFYPTAAAAQAA
GFRACKRCRPDASPGSPEWNVRGDVVARCMRLIADGTVDREGVTGLAARLGYTTRQLQRI
TQAELGASPLALARAQRAQTARVLIETTELPFSDVAFASGFASIRQFNDTVRAVCDLTPS
ELRHKARSRFGPVSAAPGALTLRLPVRAPFAYEGLFGHLAASAAPGIEEVRGDTYRRTLR
LPHGHGIVGLRPYPDHVRCELVLDDFRDLAAAIARCRRLLDLDADPEAVVEFLGADADLK
AVVAKAPGQRIPRTVDEAELALRVVIGQQVSIKAARTHVGRLVARYGSRIDDEGGGLTHV
FPSVDQLAEMSPDDLAMPASRKRTVLSMVRALADGTLVVDPGCDWGLAREQLLALPGVGP
WTAEVIAMRGLGDPDAFPASDLGVRLAAEQLGLPADTRALTAYSCRWRPWRAYATQHLWT
TLEHDVNQWPVPLAT
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgcacgaggatttcgaccgctgttaccgggccgtgcagtccaaggacgcgcggttcgac
ggctggttcgtcaccgccgtgctcaccaccgggatctactgcaggcccagttgccccgta
cgcccgccgctcgcgcgcaatctgcggttctatccgacggcggcggccgcgcaggccgcg
ggtttccgggcgtgcaagcggtgccgcccggacgcctcccccggatcacccgaatggaat
gtgcgtggtgacgtcgtcgcccggtgcatgcggttgatcgccgacggcacggtggaccgc
gagggtgtcacgggcctggccgcccggctgggctacaccacacgtcagttgcagcgcatc
acgcaggccgagctcggcgccagtcccctcgcactcgcgcgcgcccaacgcgcccagacc
gcccgcgttctcatcgagaccaccgaattgccgttcagcgacgtggcattcgcctccggg
ttcgcctccatccgtcagttcaacgacaccgtgcgggcggtgtgcgatctcaccccgagc
gaactgcggcacaaggcccgcagccggttcggaccggtgtctgcggctcccggcgcgttg
acgctgcggcttccggtgcgggccccattcgcctacgagggattgttcggccatctggcg
gcaagtgccgcaccgggtatcgaagaggttcgcggcgacacgtaccgccgcaccctgcgt
ctgccccacggacacgggatcgtcgggctgcggccgtatccggaccacgtgcgctgcgaa
ctggtgctcgacgacttccgcgacctggctgcggcgatcgcccggtgccgccgtctgctc
gacctcgatgccgatcccgaagcggtggtggagttcctcggagccgacgcagacctgaaa
gcggtggtcgccaaggcacccggacagcggatcccgcgcacggttgacgaggccgaactc
gcgttgcgggtggtgatcggtcagcaggtctcgatcaaggcggcccgcacgcacgtgggc
cggctcgtcgcacgttacggctcgaggatcgacgacgagggtggcgggctcacgcacgtg
ttccccagcgtcgatcagctcgccgagatgagcccggatgatctggcgatgccggcctca
cgcaagcggaccgtgctgagcatggttcgtgcccttgccgacggcacgctggtcgtcgat
cccggctgtgactgggggctggcacgcgaacaactgctcgcgctgcccggagtgggcccg
tggacggccgaggtgatcgccatgcggggcctgggtgatcccgacgcgttccccgcgagc
gatctcggtgtgcgcctggccgccgaacagttgggtctgccggccgatacccgggccctg
acggcctacagctgccggtggcggccgtggcgcgcgtacgcgacgcaacatctgtggacc
acactcgaacacgacgtcaaccagtggcccgtgccgctggccacgtga
DBGET
integrated database retrieval system
