Mycolicibacterium smegmatis INHR1: LI99_27415
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Entry
LI99_27415 CDS
T03409
Name
(GenBank) DNA lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
msn
Mycolicibacterium smegmatis INHR1
Pathway
msn03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
msn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LI99_27415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msn03400
]
LI99_27415
Enzymes [BR:
msn01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
LI99_27415
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
LI99_27415
DNA repair and recombination proteins [BR:
msn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LI99_27415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_TFIIB
Ribosomal_S13
NFACT_N
DUF7577
Motif
Other DBs
NCBI-ProteinID:
AIU17188
UniProt:
A0A653FA34
LinkDB
All DBs
Position
complement(5634341..5635207)
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AA seq
288 aa
AA seq
DB search
MPELPEVEALADHLRRHAVGRVVSRVDVSALSVLKTFDPPVAALHGSTVTAAHRWGKYLG
MEVESGGAPLHLITHLSRAGWLRWSDKLAPTPLKPGKGPIALRVHLGDSQGFDLTEAGTQ
KRLAVWVVRDPMDVPQIASLGPDALSLDSTALAGVLAGNSGRIKTVITDQKVMAGIGNAY
SDEILHVAKLSPFTTAGKLTDAQLGALHDAMITVLTDAVSRSVGQQAATLKGEKRSGLRV
HARTGLPCPVCGDTVREVSFADKSFQYCPTCQTGGKVLADRRMSRLLK
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactgcccgaggtcgaggcactggccgatcacctgcgccggcacgcggtcggc
cgggtggtgtcacgcgtcgacgtgtccgcgttgtcggtgctcaagacgttcgatccgccg
gtcgcggcgctgcacggcagcaccgtcacggcggcccatcgctggggcaagtacctcggt
atggaagtcgaatccggcggcgcgccgctgcacctcatcacgcacctgtcacgcgcgggg
tggctgcggtggtcggacaaactcgcacccacgccgctcaagccggggaaggggccgatc
gccctgcgcgtgcatttgggggactcccagggcttcgacctcaccgaggcgggcacgcag
aagcggctcgcggtgtgggtggtccgcgatccgatggacgtcccgcagatcgcgagtctc
ggtcccgacgcgctgtcgctggattcgacggccctggccggggtgctcgcgggcaactcc
gggcgcatcaagaccgtgatcaccgaccagaaggtgatggcgggcatcggcaacgcctac
agtgacgagatcctgcacgtggccaagctgtcgccgttcacgaccgcgggcaagctcacc
gatgcgcaactcggtgcgctgcacgacgccatgatcacggtgctcaccgatgccgtgagc
cgctcggtggggcagcaggccgcgacgttgaagggcgagaaacgctcgggcctacgggtc
cacgcgcgcaccggcctgccgtgcccggtgtgcggcgacaccgtgcgggaggtctcgttc
gccgacaagtccttccagtactgcccgacctgccagaccggcggtaaggtgctggccgac
cggcggatgtcgcgcctgctcaaatag
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