Mycolicibacterium smegmatis INHR1: LI99_29355
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Entry
LI99_29355 CDS
T03409
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
msn
Mycolicibacterium smegmatis INHR1
Pathway
msn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LI99_29355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msn03019
]
LI99_29355
03400 DNA repair and recombination proteins [BR:
msn03400
]
LI99_29355
Enzymes [BR:
msn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LI99_29355
Messenger RNA biogenesis [BR:
msn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LI99_29355
DNA repair and recombination proteins [BR:
msn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LI99_29355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Pribosyltran
HTH_Cmi2_C
Motif
Other DBs
NCBI-ProteinID:
AIU17561
LinkDB
All DBs
Position
complement(5994615..5996690)
Genome browser
AA seq
691 aa
AA seq
DB search
MVTREHAQSILEQLAGPTATLRDDQWTAIEALVVQRRQALVVQRTGWGKSAVYFIAAKLL
RNAGLGPTVIVSPLLALMRNQVDAAERAGVRAATINSGNVTEWDTIHQQVGAGDLDVLLV
SPERLNNPDFRDNVLPALASDAGLVVVDEAHCVSDWGHDFRPDYRRIRTLIAELGSDIPV
LATTATANDRVVNDVAAQLGVGGRDTLVLRGGLDRQSLRLSVVQAGTPAQRAAWIAAQID
SLPGSGIIYTLTVSQAHDVAALLAEQGHKVAAYTGSTDTAEREQLEADLLDNRVKALVAT
SALGMGFDKPDLGFVVHLGAPSSPIAYYQQVGRAGRATESAEVILLPGTEDQEVWRYFAS
VAFPSEPLVRNVLAALDTERPQSTPALETQVDLNRSRLEMVLKVLDVDGAVRRVKGGWIA
TGEPWSYDEQRYRALDEARRREQQAMLDYQATDGCRMAFLRAQLDDPELQPGERCGRCDN
CTGSRRPTAVDDATLAATAERLRRPGVAVAPRKQWPSGLASLGLQLSGRIADGAAPGRAI
GRLTDLGWGARLRRLLSEPDQDVPDEVVQAAIAVLKAWDWERRPVAVMGLDSDTHPRLIA
STVQRLAQIGRLTDLGILRYTPTRRPVTAANSAYRVAALEGSWERPQIDCDGPVLLVDDM
TDSGWTLTMAARVLRDAGVPAVLPFVLASTT
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggtcacccgtgagcacgcgcagtcgattctcgaacaactcgccggtcccacggcgacg
ttgcgcgacgatcagtggaccgcgatcgaggcgctggtggtccagcgccgccaggcgctc
gtggtgcagcgcaccggatggggcaagtccgcggtgtatttcatcgccgcgaaacttctg
cgcaatgccggcttgggccccacggtgatcgtgtcgccgctgttggcgctcatgcgcaac
caggtcgacgcggccgagcgtgccggtgtgcgggccgcgaccatcaactcgggcaacgtc
accgaatgggacaccatccaccagcaggtcggcgcgggtgacctcgacgtgctgctcgtg
agccccgaacgcctcaacaaccccgacttccgtgacaacgtgctgcccgcgctcgcgtcc
gacgcgggtctggtggtggtggacgaggcgcactgcgtatcggactgggggcacgacttc
cggcccgactaccggcgcatccgcacgctgatcgccgaattgggttcggacataccggtt
ctcgcgacgactgcgaccgccaacgaccgcgtggtcaacgatgtggcggcgcaactggga
gtcggtgggcgcgacaccctggtgctgcgcggcgggctcgatcggcagtccctgcggttg
tcggtggtgcaggccggaactcccgcgcagcgcgcggcatggattgccgcacagatcgat
tcgctgccgggctcgggcatcatctacaccctgaccgtgtcgcaggcgcacgatgtcgcg
gctctgctggccgagcagggccacaaggtggcggcctacaccgggtccaccgacactgcg
gaacgcgaacaactcgaggcggacctgctcgacaaccgggtcaaggcgctggtcgcgacc
tcggcgctggggatgggtttcgacaagccggacctgggtttcgtcgtacacctcggtgcg
ccgtcgtcgccgatcgcctactaccagcaggtgggtcgcgcgggccgtgcgaccgagagt
gccgaggtgatcctgctgccgggcaccgaggaccaggaggtgtggcgctacttcgcctcg
gtcgcgttcccgtcggaacccttggtgcgcaacgtgcttgccgcgctggacaccgagcgg
ccacaatccacgcctgccttggaaacccaggtggacctcaaccggtcgcggctggagatg
gtgctcaaggtgctcgacgtcgacggcgcggtgcgccgcgtgaaaggcgggtggatcgcc
accggagaaccgtggagctacgacgagcagcggtaccgcgcgctcgacgaggcccgtcgc
cgcgagcagcaggcgatgctcgactaccaggccaccgacggctgtcgcatggcgttcctg
cgtgcacagctcgacgaccccgaactgcagccgggggagcgctgcggccgctgcgacaac
tgcacgggatcccgccgcccgaccgcggtggacgacgcgacgctcgccgcgaccgccgaa
cggttgcgccgccccggggtggcggtggcgccacgcaaacagtggccgtcgggcctggca
tcactgggcctgcagttgtcaggccggatcgccgatggtgcggcacccggtcgcgccata
ggcaggctcaccgacctgggctggggtgcgcggctgcggcgattgctctccgaacccgac
caggacgtgcccgacgaggtggtccaggccgcgatcgcggtgctcaaggcgtgggactgg
gagcgccgccccgtcgcggtcatgggcctcgactcggacacccatccacggctcatcgcc
tcgaccgtgcaacgcctggcccagatcggccggctcaccgacctgggcatcctgcgctac
accccgacccgacgtcccgtcacggccgcgaactccgcgtaccgcgtcgcggcactcgaa
ggatcgtgggaacgtccccagatcgactgcgacgggccggtactgctggtcgacgacatg
acggactcgggctggacgttgacgatggccgcacgggtgttgcgggacgcgggcgtgccg
gcagtcctgccgttcgtcctggcgagcaccacctga
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