Mycoplasmopsis synoviae ATCC 25204: VY93_02640
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Entry
VY93_02640 CDS
T04518
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mso
Mycoplasmopsis synoviae ATCC 25204
Pathway
mso03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mso00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VY93_02640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mso03021
]
VY93_02640
03400 DNA repair and recombination proteins [BR:
mso03400
]
VY93_02640
Enzymes [BR:
mso01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VY93_02640
Transcription machinery [BR:
mso03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VY93_02640
DNA repair and recombination proteins [BR:
mso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VY93_02640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AKB11216
LinkDB
All DBs
Position
complement(599083..603561)
Genome browser
AA seq
1492 aa
AA seq
DB search
MSNTFSKNNVKKIKQISLSLATNEDVLSWSNGVVSKPETINYKTYKPEKDGLFDEIIFGP
VTDFKCPICFTKYKKSDENTICKRTTSCEKIQPKILPKISRRSRMGHIALNNPVVHFWFF
KINHSTISKLLGLKVAGSNKPVTKSDLEKIIYYKSHIVLETGGLKSLQKNTIIDINDAAD
IYAGALEEILEFNKDNKDGYEEILDTLNDLKEYAASKTGQDYGIDFYEYNEIIEEYSQAK
IGTGSKAIEYLLKNIDLEKESKEIQDEIDTINDQNKYEISSSEALKRNKLYKRLAIIKSF
LKSGQKPENLLIYNLPVIPADLRPLVQLDGGRHSTSDINELYRRIIIRNNRLEKWYESDA
PVLIKQNEFRMLQEAVDALIDNSRKKPGPVTSKDGHPFKSISDALVGKKGRFRQNLLGKR
VDYSGRSVIVVGPHLKMYQVGIPRDMAAKLFEPWIINRIMKEEEGINSVKAAKKLVDSLN
PIIWPYVEQVLENRPVLLNRAPTLHRLSIQAFQPVLIRGKAIKIHPLVTTAFNADFDGDQ
MAVHVPISKAAVREAQELMLASKNILGPKDGEPIINPSQDIILGLYYLTIEKANQKNEGK
FYPSFNEMMLAYENKYINLATRVVLPVSALKKISILQKTDAPYIYSTVGKFILNNAFPRD
FDFVFGKRVTEKLTSTNEHGEEVVSLKTKIDTSEHDIKRYVFNYGDNFTAKIKEADVNLP
LNKKEIAKIVRNIYEKYVPIVNIEDISQVINKIDKTQLDKLHELCSELKDFNGNKLEDNR
IHLELLVRLIKEEFLKIQDQYFAKDEESIFNHQYWELKHYTKLLERVWFRYSNYVSTVLD
VIKDLGFKFSTKSGITISMNDIVTSKTTKERIKKAEEETETLKDYFKKGYLTDDERYTLT
IKKWSDVKESIEKELKKVVDSNLDNPLFMMLSSGARGTYSNFTQLAGMRGLMNNNTKILK
ADAENDRVVRSIVEIPVKSSFLDGLTAYEFYSSTHGARKGLTDTALNTAKSGYLTRRLVE
VAQGVVIREEDCGSDYGFVVKDIKDTKTNTIIESLQERIEGRFTAVPIYDQNGKLIVKES
ELITPEIASEIVVKGITKVEIRSVLSCHTRNGLCKKCYGKDLATNRIVNIGEAVGVIAAQ
SIGEPGTQLTMRTFHTGGVAGGEDITGGFGRLIELIDAYDQPWGTPAEISRHYGKVKKIE
TQKNKKGKESGQFNISVEYFDEDGNKQTHQYLVKSSQRLRVKQGDEVVAGQKLSEGPIVL
NELLESVDTRAVQNYILKEVQKLYRLQGIAIADKYIEIIIRQMLSKISIIDPGDSSFYSG
SLVDTFVYQKENGILLSQGKKPAYGVVKIKGAKQTPLLSDSWLAAASYQETAKILVDASI
AKRTDNLEGLKENIIIGYKIPAGTNSNFEENGKYNLKEFSSYFPNKYDSTPELKLEEITD
ENIEEEFDYLKENTISEEEFENLDDDTMYHLETSDEFEDESFGEDDFEYSEE
NT seq
4479 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatacattttcaaaaaataacgtaaaaaaaattaaacaaatttcattatcacta
gctactaatgaagatgttttatcatgatcaaatggtgttgtttcaaaacctgaaactata
aactataaaacctataaaccagaaaaagatggtctttttgatgaaataattttcggacca
gttactgattttaaatgtcctatttgctttacaaaatacaaaaaaagtgacgaaaataca
atttgtaaaagaactacatcttgtgaaaaaattcaaccaaaaattcttcctaaaatttca
agaagaagcagaatgggtcatattgcactaaataatcctgtagtgcacttttgattcttt
aaaattaaccactctactatttcaaaattattaggactcaaagtagccggaagcaataaa
ccagttaccaaaagtgatttagaaaaaattatttactataaatcacatatcgtgctagaa
accggtggattaaaatcactacaaaaaaataccataatcgatattaacgacgctgccgat
atttacgctggcgctttagaagaaattctagagttcaataaagataataaagatggctac
gaagaaattttagatacactaaatgatctaaaagaatatgccgcttcaaaaaccggtcaa
gactatggaattgacttctatgaatacaacgaaatcattgaagaatattctcaagcaaaa
ataggaaccggttctaaagctattgaatatttacttaaaaatattgatctagagaaagaa
tctaaagaaattcaagatgaaatcgataccattaacgatcaaaataaatatgaaatttca
tcatctgaagctcttaaaagaaataagctttacaaacgtttagcaattattaaatcattt
ttaaaatcaggacaaaaacctgagaatcttttaatttacaatcttcctgttattccagca
gatttacgtcctttagttcaactagatggtggaagacactcaactagtgatatcaatgag
ttataccgtagaattattattagaaataaccgtcttgaaaaatgatacgaatcagatgct
cctgttttaattaagcaaaatgaattccgtatgcttcaagaagccgttgacgcactaatt
gataactcacgtaaaaaaccagggccagttacttcaaaagatggtcacccttttaaatct
atttcagatgctcttgttggtaaaaaaggtcgtttcagacaaaaccttttaggaaaacgt
gttgactattcaggtagaagtgttattgtggttgggcctcatttaaaaatgtatcaagtg
ggaattcctagggatatggccgctaagctttttgagccttgaattatcaatagaataatg
aaggaagaagaaggaattaattcagtgaaagctgctaaaaaattagtagactcacttaat
cctatcatttgaccttatgtagagcaagttttagaaaatcgtcctgttttactaaaccgt
gctcctacacttcataggctttctattcaagcctttcaacctgttttaattagaggaaaa
gctattaaaattcaccctctagttacaacagcttttaacgctgacttcgatggggaccaa
atggctgttcacgttcctatttctaaagccgccgttagagaagcgcaagaattaatgcta
gcttctaaaaatattttggggcctaaagatggagagcctattattaacccatctcaagat
attattttaggtctatattatttaacaattgaaaaagctaaccaaaaaaatgaaggtaaa
ttctatccttcatttaacgaaatgatgctagcttatgaaaacaaatacattaatctagca
actagagtagtgcttcctgttagcgctcttaaaaaaattagcattcttcaaaaaacagat
gctccttatatttattcaaccgttggtaaatttatattaaacaacgcctttcctagagat
tttgattttgtttttggaaaaagagttactgaaaaattaacaagcaccaacgagcatggc
gaagaagtagttagccttaaaactaaaatcgatacttctgagcatgacattaaaagatac
gtatttaactatggagataacttcacagctaaaattaaagaagcagatgttaatcttcca
ttaaataaaaaagaaatcgctaaaatcgttagaaacatttacgaaaaatacgttccgatt
gtaaatattgaagatatttcacaagtaattaataaaattgataaaactcagctagataag
cttcacgagctatgctctgagcttaaagactttaacggaaacaaactagaagataataga
attcatctagaacttcttgtgcgtttaattaaagaagaatttcttaaaatccaagatcaa
tattttgccaaagatgaagaatctatttttaaccaccaatattgagagttaaaacattac
acaaagcttttagaaagagtttgatttagatattcaaattatgtttctactgttttagat
gtaattaaagatttaggatttaaattctcaactaaatctggaattacaatttcaatgaat
gacattgtaacttcaaaaactactaaagaaagaattaaaaaagctgaagaagaaactgaa
actttaaaagattacttcaaaaaaggatatctaaccgatgacgaaagatataccttaaca
attaaaaaatgatcagacgttaaagaatcaattgaaaaagaacttaaaaaagtagttgat
tctaacttagataacccgctatttatgatgctttcatcaggagctcgtggaacttattca
aacttcactcagctagctggtatgcgtggactgatgaataacaacaccaaaattcttaaa
gccgatgctgaaaacgatcgtgttgttagatcgatagttgaaattccagttaaatcatca
tttttagatggactaaccgcttatgaattctattcatcaacccacggggctagaaaaggg
ctaaccgataccgcgcttaataccgctaagtcaggatacttaacccgtcgtttagttgaa
gttgctcaaggtgttgtaatccgcgaagaagactgtggaagtgactatggttttgtagtt
aaagacattaaagacaccaaaactaacaccattatcgaatcacttcaagaaagaatcgaa
ggtagatttaccgcagttccaatttatgatcaaaacggaaaattaatagttaaagaaagc
gaattaataactccagaaatagctagtgaaattgtagttaaaggaattaccaaagtagaa
attagatctgttttatcatgtcatacaagaaatggattatgtaaaaaatgctacggtaaa
gatttagcaaccaatagaatagtaaatattggagaagccgttggagttatagccgcgcaa
agtataggtgagcctggaactcagctaaccatgcgtaccttccataccggaggggttgca
ggtggagaagatataaccggtggatttggtcgtttaatcgaacttatcgatgcatatgac
caaccatgaggaactcctgctgaaatttcaagacactacggtaaagttaaaaagatcgaa
acccaaaagaataaaaaaggtaaagaaagcggtcaatttaacatttcagttgaatacttt
gatgaagatggaaacaaacaaactcatcaatacttagttaaatcaagtcaaagacttcgt
gtaaaacaaggtgatgaagttgttgctggacaaaaactttcagaaggacctatcgtgcta
aacgagctgcttgaatcagtagataccagagcggttcaaaactatattcttaaagaagtt
caaaaactataccgtcttcagggaattgcaattgccgataaatatattgaaattattatt
cgtcaaatgctttcaaaaatttcaataatcgatccaggagattcaagtttctactcagga
tctctagtggatacttttgtataccaaaaagaaaatggaattctactttcacaaggtaaa
aaacctgcctatggtgtggtaaaaattaaaggagcaaaacaaactccgctactaagtgat
tcatgactagcggcagcatcataccaagaaactgcaaaaattttagttgatgcctctatt
gcaaaaagaactgataatttagaaggactaaaagaaaatatcattattggatataaaatt
ccagccggaactaattccaatttcgaagaaaatggaaaatataaccttaaagaattttca
agttacttccctaataaatacgattcaactccagagctaaaactagaagaaatcaccgat
gaaaacatcgaagaagaattcgattatttaaaagaaaacactatctcagaagaagaattc
gaaaacctagatgacgatactatgtatcacttagaaactagtgatgaattcgaagatgaa
tcttttggtgaagatgactttgaatacagcgaagaataa
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