Mycolicibacterium gilvum Spyr1: Mspyr1_12530
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Entry
Mspyr1_12530 CDS
T01376
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
msp
Mycolicibacterium gilvum Spyr1
Pathway
msp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
msp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Mspyr1_12530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msp03400
]
Mspyr1_12530
Enzymes [BR:
msp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Mspyr1_12530
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Mspyr1_12530
DNA repair and recombination proteins [BR:
msp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Mspyr1_12530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Ribosomal_S13
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
ADT97933
UniProt:
E6THY6
LinkDB
All DBs
Position
1275204..1276067
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AA seq
287 aa
AA seq
DB search
MPELPEVEALADHLRRHAVGLTVGRVDVASLSVLKTFDPPVSALVGREVTAANRWGKYLG
LQAGDLHLITHLSRAGWLRWSDKLAAAPLKPGKGPIALRVHLGTPGEAPGYDLTEAGTQK
RLAVWLVTDPLAVPQIASLGPDALSLTLPAFTEMLSGESGRIKTVITDQKVISGIGNAYS
DEILHVARLSPFATANKLTEAQRADLYDAMITVLTDAVTRSVGQQAATLKGEKRSGLRVH
ARTGLPCPVCVDTVREVSFADKSFQYCATCQTGGKVLADRRMSRLLK
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagttgcccgaggtcgaagcgctcgccgaccacctgcgccgccacgccgtcggt
ctgaccgtcggccgggtcgacgtcgcgtccctgtcggtgctcaagacgttcgatccgccg
gtgtccgcgctcgtcggccgggaggtcaccgccgccaaccggtggggcaagtacctcggc
ctgcaggccggtgacctgcacctgatcacccatctgtcccgggccgggtggttgcgctgg
tcggacaagctcgccgccgcgccactcaagcccggcaaggggccgatcgcgctgcgggtg
cacctcgggacgcccggtgaggcgcccggatacgacctgaccgaggccggaacccagaaa
cgcctcgcggtgtggctggtcaccgatcctctggcggtgccgcagatcgcgtcgctgggg
ccggacgcgttgtcgctgacgctgccggcgttcaccgagatgctctcgggggagtcgggc
cgcatcaagaccgtcatcaccgaccagaaggtcatctccggcatcggcaacgcctacagc
gacgagatcctgcacgtcgcgaggctctctccgttcgcgacggccaacaagctcaccgag
gcgcagcgcgccgacctgtacgacgcgatgatcacggtgctcaccgacgcggtgacccgg
tcggtcgggcagcaggccgcgacgctgaagggcgagaaacggtccgggctgcgcgtgcac
gcccgcaccgggctgccgtgcccggtctgcgtggacaccgtgcgggaggtgtcgttcgcc
gacaagtcgttccagtactgcgcgacgtgccagacgggcggcaaggtgctcgccgaccgc
aggatgtcccggctgctgaaatga
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