Mycolicibacterium gilvum Spyr1: Mspyr1_17330
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Entry
Mspyr1_17330 CDS
T01376
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
msp
Mycolicibacterium gilvum Spyr1
Pathway
msp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mspyr1_17330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msp03021
]
Mspyr1_17330
03019 Messenger RNA biogenesis [BR:
msp03019
]
Mspyr1_17330
Transcription machinery [BR:
msp03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Mspyr1_17330
Messenger RNA biogenesis [BR:
msp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Mspyr1_17330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
AAA_25
Fungal_virus_P2_C
NACHT
Pentapeptide_2
VWA_2
S1CSD-TOTE-2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADT98398
UniProt:
E6TA74
LinkDB
All DBs
Position
1763881..1765971
Genome browser
AA seq
696 aa
AA seq
DB search
MTDTDLFTAGGNADSGEMPNTVTADISTSAPADSAPAAAPARRGGSLTSMVLPELRAMAK
EIGVEGASGMRKGELIASIRERRGEANGSAETKKGDAPTSAPAETAAGSATDSGQAPAAA
QAGQDEAAEPQPQQRRRERRGASRDQGGPSSAEQAQPQETADGAQDDAGETEGRRRRSQQ
DAQGGRDEARESKGADQTTADSDGGNRGDGGDQQGGGQNRNRNDNRGDSNRGNDNRGNDN
RGNDNRGDSNRGNDNRGNDNRGNDNRGGGGDNDDDGEGRQGRRGRRFRDRKRRERGGDGG
GGERDTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAV
TGAVRVPRDNEGGGDKNPRQKFNPLVRLDTVNGKPVEEAKKRPEFTKLTPLYPNQRLRLE
TSSDKLTTRVIDLIMPIGKGQRALIVSPPKAGKTTIMQDIANAITRNNPECHLMVVLVDE
RPEEVTDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLG
RAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVI
FEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSTDEFAVVHKLRRVLSGLD
PHQAIDLLMSQLRKTKNNYEFLVQVSKNTPGGNDHD
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgatacggacctcttcacggctggtggcaacgccgacagcggcgagatgccgaac
accgtgactgcagacatttcgacgtccgcgcccgcggacagcgcgccggcggcggccccc
gcccggcgaggcggctccctgaccagcatggtcctgcccgagctgcgcgcgatggccaaa
gagatcggcgtcgagggcgcctccgggatgcgcaagggcgaactgatcgcctccatccgt
gagcgccgtggcgaggccaacggctccgccgagacgaagaagggcgacgccccgacgagc
gcgcccgccgagaccgccgccgggtcggccaccgactccgggcaggctcccgccgcagcg
caggccggtcaggacgaggccgccgagccgcagccgcagcagcgcaggcgtgaacgccgt
ggggcctcccgcgaccagggcggcccgagcagtgccgagcaggctcagccgcaggagacc
gccgacggtgcccaggatgacgccggtgagacggaaggccgccgccgacggtctcagcag
gacgctcagggcggccgcgacgaggcgcgcgagagcaagggcgcagatcagaccactgcg
gactccgacggaggcaaccgcggcgacggcggcgatcagcagggtggcggccagaaccgc
aaccgcaacgacaaccgcggcgacagcaaccgtggcaacgacaaccgtggcaacgacaac
cgcggcaacgacaaccgtggcgacagcaaccgtgggaacgacaaccgcggcaacgacaac
cgtgggaacgacaaccgcggcggtggcggcgacaacgacgacgacggcgaaggccgccag
gggcggcgcggccgccggttccgtgaccgcaagcgccgggaacgcggcggcgacggtggc
ggcggtgagcgcgacaccgagcttcgcgaggacgatgtcgtccagcctgtggcgggcatt
ctcgacgtcctcgacaactacgcgttcgtgcggacctccggatacctggccggccccaac
gacgtgtacgtgtccatgaacatggtccggaagaacggtctgcgccgcggcgatgccgtc
accggcgcggtccgcgtgccccgtgacaacgagggcggtggcgacaagaacccccggcag
aagttcaatccgctggtgcggctcgacacggtcaacggcaagcccgtggaagaggccaag
aagcgccccgagttcacgaagctcaccccgctctacccgaaccagcgactgcgcctcgaa
acgagcagcgacaagctgaccacgcgtgtgatcgacctcatcatgccgatcggcaagggg
cagcgcgcactcatcgtgtccccgccgaaggccggtaagacgacgatcatgcaggacatc
gccaacgcgatcacccgcaacaaccccgagtgccatctgatggtcgtgctcgtcgacgag
cgccctgaagaggtcaccgacatgcagcgctcggtcaagggcgaggtcatcgcctcgacc
ttcgaccggccgccgtctgaccacacccaggctgctgagctcgccatcgaacgggccaag
cgtctcgtcgagcagggcaaggacgtcgtggtgctgctcgactcgatcacccgtctgggt
cgcgcgtacaacaacgcgtccccggcgtcgggccgaatcctgtccggtggcgtcgattcg
acggccctctacccgccgaagcgattcctcggcgcggctcgcaacatcgaagagggcggc
tcgctgacgatcatcgccacggcaatggtcgagaccgggtccaccggcgacacggtgatc
ttcgaggagttcaagggcaccggcaacgcggagctcaagctcgatcgcaagatcgccgag
cggcgcgtcttcccggccgtcgacgtcaacccgtcaggcacccgcaaggacgagctgctg
ctctcgacagacgagttcgccgtcgtgcacaagctgcgtcgcgtgctgtccggactggat
ccgcaccaggccatcgatttgttgatgagccagttgcgcaagaccaagaacaactatgag
ttcctggtccaggtctccaagaacacccctggcggcaacgaccacgactga
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