Mycolicibacterium gilvum Spyr1: Mspyr1_45130
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Entry
Mspyr1_45130 CDS
T01376
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
msp
Mycolicibacterium gilvum Spyr1
Pathway
msp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
msp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Mspyr1_45130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msp03021
]
Mspyr1_45130
03400 DNA repair and recombination proteins [BR:
msp03400
]
Mspyr1_45130
Enzymes [BR:
msp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Mspyr1_45130
Transcription machinery [BR:
msp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Mspyr1_45130
DNA repair and recombination proteins [BR:
msp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Mspyr1_45130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Motif
Other DBs
NCBI-ProteinID:
ADU01068
UniProt:
E6TF22
LinkDB
All DBs
Position
complement(4667775..4671725)
Genome browser
AA seq
1316 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRNWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITAVDDEMRHNELSTLEAEMVVEKKAIEDQRDADLEARAQKLEAD
MKELEEEGAKSDVRRKVRDGGEREMRQLRDRAQRELDRLDEIWTTFTKLAPKQLIVDELL
YRELQDRYGEYFEGAMGAESIKKLIETFDIDAEADSLRDTIKNGKGQKKLRALKRLKVVA
AFQTNRNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVISEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYFLTTEIEGDKGEFT
PAAKDQPESGVYSSPAEAIMAMDRGALSVRAKIRVRLTQLRPPAEIEAERFPDGWNMGDA
WTAETTLGRVLFNELLPRGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAGF
YWATRSGVTVSMADVLVPPEKQEILERYEAAADSIEKQYQRGKLDKGERNEALVKIWQDA
TEEVGQALRSHYPKDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCETERGITVTL
AELQGDQLLRDQHIETSAYARTLATDAVDANGNVVVERGHDLGDPAIDALLAAGITEVKV
RSVLTCATGTGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVTG
GADIVGGLPRVQELFEARIPRNRAPIADVSGRIRLEESDKFYKITIVPDDGGEEVVYDKL
SRRQRLKVFKHDDGSERLLTDGDHVEVGQQLLEGSADPHEVLRVQGPREVQIHLVKEVQE
VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERGEFETENRRVVAEGGEP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLQGLKENVIIGKLIPA
GTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
gtgctagacgtcaacttcttcgatgaactccgcatcggtctcgcgaccgcggacgacatc
cgcaactggtccttcggcgaggtcaagaagccggagaccatcaactaccgcacgctgaag
ccggaaaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaagtacaagcgcgtccggttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgggccaaggtgcgccgtgagcggatgggccacatcgagctcgccgcaccc
gtcacgcacatctggtacttcaagggcgtgccctcgcgtctgggctacctgctcgacctg
gccccgaaggatctcgagaagatcatctacttcgcggcctacgtgatcaccgcggtcgac
gacgagatgcgccacaacgagctctcgacgctcgaagccgagatggtcgtcgagaagaag
gccatcgaggatcagcgcgacgccgacctggaggcgcgggcgcagaagctcgaagccgac
atgaaggagctcgaggaagagggcgcgaagtccgacgtgcgccgcaaggtgcgcgacggc
ggcgagcgcgagatgcgtcagctgcgcgaccgggcccagcgtgagctggaccggctcgac
gagatctggacgacgttcaccaagctggctcccaagcagctgatcgtcgacgagctgctc
taccgcgagctgcaggaccgctacggcgagtacttcgaaggcgccatgggcgcggagtcg
atcaagaagctcatcgagaccttcgacatcgacgccgaggccgattcgctgcgcgacacc
atcaagaacggcaagggccagaagaagctgcgtgcgctcaagcgactcaaggtcgtcgcg
gcgttccagaccaaccggaactcgccgatgggcatggtcctcgacgccgtcccggtgatc
ccgccggagctgcgcccgatggtccagctcgacggtggccgcttcgcgacgtcggatctc
aacgatctgtaccgccgcgtgatcaaccgcaacaaccgtctcaagcgactgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcgcatgcttcaggagtcggtggacgcg
ctgttcgacaacggccgtcgcggccgtccggtgaccgggccgggcaaccgcccgctcaag
tcgctgtccgatctgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgctcggtcattgttgtcggcccgcagctgaagctgcaccag
tgtggtctgcccaagctgatggccctcgagctgttcaagccgttcgtgatgaagcgtctg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcgcatggtcgagcgtcagcgt
ccgcaggtgtgggacgtcctcgaagaggtcatctccgagcacccggtgctgttgaaccgt
gcaccgacgctgcaccgcctcggcatccaggccttcgagccgcagctggtggagggcaag
gccatccagctgcacccgctggtgtgtgaggcgttcaacgccgacttcgacggcgaccag
atggccgtgcaccttccgctgtccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctgtcgccggcgtcgggccgcccgctggccatgccgcgtctggac
atggtcaccggtctgtacttcctgaccaccgagatcgagggtgacaagggtgaattcacc
ccggccgccaaggatcagccggagtccggtgtgtacagcagcccggccgaggccatcatg
gcgatggaccgcggtgcgctgagcgtgcgcgccaagatccgggttcggctgacgcagctg
cgtccgcccgccgagatcgaggccgagcggttccccgacggctggaacatgggcgacgcc
tggacggcggagaccactctgggccgtgtgctcttcaacgagctgctgccgcggggctac
ccgttcgtcaacaagcagatgcacaagaaggtgcaggccgcgatcatcaacgatctggcc
gagcgctacccgatgatcgtcgtcgcgcagaccgtcgacaagctcaaggacgccggcttc
tactgggccacccgctcgggtgtcaccgtgtcgatggccgacgtgctcgttccgccggag
aagcaggagatcctcgagcgctacgaggcggctgccgacagcatcgagaagcagtaccag
cgcggcaagctcgacaagggcgagcgcaacgaagcgttggtgaagatctggcaggacgcg
accgaagaggtcggtcaggcgctgcgctcgcactacccgaaggacaacccgatcatcacg
atcgtggattcgggcgcgacgggtaacttcacccagacgcggacgctggccggcatgaag
ggtctggtgaccaacccgaagggtgagttcatcccgcgtccgatcaagtcctcgttccgc
gagggcctgacggtgctggagtacttcatcaacacccacggcgcgcgtaagggcttggcg
gacaccgcacttcgtaccgccgactccggttacctgacccgtcgtctggtcgacgtgtcg
caggacgtcatcgtgcgcgagaccgactgtgagaccgagcgcggcatcacggtcacgctg
gccgagttgcagggcgatcagctgctgcgtgatcagcacatcgagacgtccgcctacgcg
cggacgctggccaccgacgcggtcgacgccaacggcaacgttgtcgtcgagcgtggtcac
gatctcggtgacccggcgatcgatgcgctgctggccgccggcatcaccgaggtgaaggtc
cgctccgtgctgacctgcgccaccggcaccggcgtgtgcgcgatgtgctacggccgctcg
atggccaccggcaagctcgtcgacatcggcgaggccgtcggtatcgtcgctgcgcagtcc
atcggtgagcccggcacgcagctgaccatgcgtaccttccaccagggtggcgtcaccggc
ggtgccgacatcgtcggtggtctgccccgcgtgcaggagctgttcgaggcccgcattccg
cggaaccgggccccgatcgccgacgtctccggccggatccggctggaggagagcgacaag
ttctacaagatcaccatcgttcccgacgacgggggcgaagaggtcgtgtacgacaagctc
tcgcgtcgtcagcgcctgaaggtgttcaagcacgacgacggctccgagcgtctgctcacc
gacggcgaccacgtcgaggtcggccagcagctgctggaaggctcggcggacccgcacgag
gtgctgcgcgtccagggtccccgcgaggtgcagatccacctcgtcaaggaggtccaggag
gtctaccgcgcccagggtgtgtcgatccacgacaagcacatcgaggtcatcgtccggcag
atgctgcgtcgcgtcacgatcatcgattcgggtgcgacggagttcctgcccggctcgctg
accgagcgtggcgagttcgagacggagaaccgtcgggtggtcgccgagggcggcgagccc
gcggccggccgtccggtgctgatgggtatcacgaaggcgtcgctggccaccgattcgtgg
ctgtcggcggcgtcgttccaggagaccacccgcgtgctgaccgatgcggcgatcaactgc
cgcagcgacaagctgcagggtctgaaggagaacgtgatcatcggcaagctgatcccggcc
ggcaccggcatcaaccggtaccgcaacattcaggttcagccgaccgaagaagcacgtgcg
gccgcgtacacgatcccgtcctacgaggatcagtactacagcccggacttcggccaggcg
accggcgccgcggtgccgctcgacgactacggctactccgactaccggtag
DBGET
integrated database retrieval system
