Mycolicibacterium gilvum Spyr1: Mspyr1_51250
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Entry
Mspyr1_51250 CDS
T01376
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
msp
Mycolicibacterium gilvum Spyr1
Brite
KEGG Orthology (KO) [BR:
msp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msp03019
]
Mspyr1_51250
Enzymes [BR:
msp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Mspyr1_51250
Messenger RNA biogenesis [BR:
msp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Mspyr1_51250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
NACHT
T2SSE
nSTAND3
AAA_25
AAA_30
ABC_tran
Zeta_toxin
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
ADU01652
UniProt:
E6TNH5
LinkDB
All DBs
Position
complement(5310687..5314604)
Genome browser
AA seq
1305 aa
AA seq
DB search
MRALRARLDGLTISDAARLGRRLRQLRTPDPAALARLAERFTAAESLVATRLAAVPEITY
PDLPVSERRDDIAAAIAANQVVIVAGETGSGKTTQLPKICLEMGRGIRGTIGHTQPRRLA
ARTVATRIAEELGTPLGEAVGYTVRFTDQASDRTLVKLMTDGILLAEVQRDRRLLRYDTL
IIDEAHERSLNIDFLLGYLRRLLPRRPDLKVIVTSATIEPERFARFFAGGEHGSGAGAPI
VEVSGRTYPVEIRYRPLEVAVSAGDDDDPDDPDHEVVRTELRDPTEAIIDAVAELESEPR
GDVLVFLSGEREIRDTAEALRAVTDPSHTEVLPLYARLPTAEQQKVFSPSRTARRIVLAT
NVAETSLTVPGIRYVVDPGTARISRYSRRTKVQRLPIEPISQASAAQRAGRSGRTAPGVC
IRLYSEQDFESRPRYTDPEILRTNLAAVILQMAALGFGDIEAFGFLDPPDARSIRDGVAL
LQELGAFDRQGELTDIGRRLAQIPVDPRLGRMILQADHEGCVREMLVLAAALSIPDPRER
PADREDAARQKHARFADEHSDFTSFLNLWRYLTEQRKERSGSSFRRMCRDEFLHYLRIRE
WQDLVGQLRSICRDLGIREQDEPADPRSVHAALAAGLLSHVGMRDTDGRAYDGARNAKFV
LAPGSVLSRRPPRWVVVADLVETSRLFGRTAARIEPDTVERVAGHLLQRTYSEPHWDAER
GAVMAYERVTLYGLPLVARRRIGYGQVDPEVSRDLFIRHALVEGDWRTKHHFFRDNARLR
EELAGLEDRARRRDLLVGDDEIFAFYDARIPADVVSSRHFDGWWRKERHRNPDLLTLTRE
DLLRNDTDAEQPDTWQAGDLNLPLSYRFDPGSSDDGVTVHVPVDVLARLGGDDFAWQVPA
LREELLTALIKSLPKDLRRNFVPAPDTARALLNAITPDSGPLLDAVQRELRRRTGILVPI
DAFDLSKLPPHLRVTFAVEDADGSVVSRGKNLDELQQQLAAPTRQAVAATVAGDLERTGL
RDWPADLDELPRVVESAGASGHVVRGYPALVPAGASVAIKVFATKDEQDAVMARGSRRLL
LLAAPSVTKTVERGLDTRTRLLLGNNPDGSLSALLEDCAQAAVQILVPDPVWTKKEFAAT
RHRLTAGLAQTTADIVRRVQKVLAALHEVELAVPKQPSPAQADAIADIRAQLSRLVPTGF
VTATGAAKLGDLTRYLTAIDRRLERLPHALGADRERMDRVAAVQDAYDDLRAALSPARAA
APEVVDIAWMIEELRVSLWAQQLGTARPISEQRIYRALNAAETGR
NT seq
3918 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcgccctgcgcgcacgtctcgacgggctgacgatcagcgacgccgccaggctgggg
cgccggctgcggcaactgcgcacgccggaccccgcggcgctcgcgcgtctcgccgaacgg
ttcaccgcggccgagtcgctggtcgccacccggctggccgccgtccccgagatcacctat
ccggatcttcccgtctcggagcgccgcgacgacatcgccgcggccatcgccgccaaccag
gtcgtcatcgtggccggggagaccggatcgggtaagaccacgcagctgcccaagatctgc
ctcgagatgggcagggggatccgcggcacgatcggccacacgcagccacggcggcttgcg
gcccgcaccgtcgcgacgcgcatcgccgaggaactgggcaccccgctgggggaggcggtc
ggctacaccgtgcgcttcaccgaccaggcgagcgatcgcacgttggtgaagttgatgacc
gacggcatcctgctcgccgaggtgcagcgtgaccggcggctcctgcgctacgacacgctg
atcatcgacgaggctcacgagcgcagcctcaacatcgacttcctgctcggatacctgcgc
cggctgctgccgcggcggcccgacctgaaggtcatcgtcacctcggcgaccatcgaaccg
gaacgcttcgcgcggttcttcgccggaggcgaacatggatccggtgccggagcaccgatc
gtggaggtgtcgggacgcacctaccccgtcgagatccggtaccggccattggaagtcgcc
gtgtcagccggcgacgacgacgatcccgacgacccggaccacgaggtcgtgcgcaccgaa
ctgcgcgatccgaccgaggcgatcatcgacgccgtcgccgagctggagagcgaaccgcgc
ggcgatgtgctggtcttcctgtccggtgagcgtgagatccgggacaccgccgaggcgttg
agggcggtgaccgatccgagccacaccgaggtcctgccgctgtacgcgaggctgccgacg
gcagagcagcagaaggtgttctcgccgagccgaacggcacgccgaatcgtgttggccacc
aacgtcgccgagacatcgctgacagttccggggatccggtacgtcgtcgaccccggcacc
gcccgcatttcccggtacagccgcagaaccaaggtgcagcggctgccgatcgaaccgatc
tcgcaggcctcggcggcccagcgggcgggccggtccggacgtaccgcccccggcgtgtgc
atccggctgtactccgaacaggacttcgaatcccggccccgctacaccgatccggagatc
ctgcgcaccaacctcgccgcggtgatcctgcaaatggccgcgctcgggttcggcgacatc
gaggccttcggcttcctcgacccgcccgacgcgcgaagcatccgcgacggggtggcgctg
ctgcaggaactcggcgcgttcgatcgtcagggcgagctcaccgacatcgggcgccggctc
gcgcagataccggtggacccccgtttgggccgcatgatcctgcaggcggaccacgagggc
tgcgtgcgcgagatgctcgtgctggccgccgcactgtcgatccccgatccgcgggagcgc
cccgccgaccgggaggacgccgcgcggcagaagcatgcgcgcttcgccgacgagcactcc
gacttcacctcgttcctgaacctctggcggtacctgaccgagcagcgaaaagagcgctcc
ggcagctcctttcgccggatgtgccgcgacgagttcctgcactacctgcgtatccgcgag
tggcaggacctggtcggtcagctgcgcagcatctgccgcgatctcgggatcagggagcag
gacgaaccggcggacccgcggtcggtgcacgccgcgctggccgccggactgctgtcccat
gtcggcatgcgcgacaccgacggccgcgcctacgacggcgcccgcaacgcgaagttcgtg
ctcgcccccgggtcggtgctgtcccggcgcccgccgcgctgggtcgtcgtggccgacctc
gtcgagaccagtcggctgttcggcaggacggccgcgcgtatcgaacccgacaccgtggag
cgggtcgccgggcatctgttgcagcgcacctacagtgagccgcactgggatgccgagcgc
ggcgccgtgatggcctacgagcgggtcaccctgtacggtctgccgctggtggcccgtcgc
cgtatcggctacggccaggtcgaccccgaggtgtcgcgcgacctgttcatccggcacgct
ctggtcgagggcgactggagaaccaagcaccacttcttccgcgacaacgccaggctgcgt
gaggaactcgccggcctggaggaccgggcgcggcggcgcgacctgctcgtcggcgacgac
gagatcttcgcgttctacgacgcgcggattccggcggatgtggtgtcgtcgcggcacttc
gacggctggtggcgcaaggagcggcaccgcaacccggacctgttgacgctgacccgggaa
gacctgctgcgcaacgacaccgacgccgagcagcccgacacctggcaggccggcgacctg
aacctgccgctgagctatcgcttcgatccgggatcgtccgacgacggcgtcaccgtgcac
gttcccgtcgacgtgctggcccgtctcggcggtgacgacttcgcctggcaggtgcccgcg
ctgcgcgaagaacttctcaccgcactgatcaagtcgttgcccaaggacctgcgacgcaac
ttcgtgcccgcaccggacaccgcacgggcactgctgaacgcgatcactcccgacagcggt
ccgctgctcgacgccgtgcaacgcgaactgcgccgccgcacaggcattctcgtaccgatc
gatgccttcgatctgagcaagctgcccccgcacctgcgggtcaccttcgccgtcgaggac
gccgacggttccgtggtgtcgcgcggtaagaacctcgacgagctgcaacagcagttggcg
gcaccgacccggcaggccgtggcggccactgtcgcaggcgatctggagcgcaccggcctg
cgcgactggccggccgacctcgacgagctgccccgggtggtggagagtgccggcgcctcg
ggacacgtcgtgcgcggctatccggcactggtgccggccggcgcgtcggtcgccatcaaa
gtcttcgccaccaaggacgagcaggatgcggtgatggcccgcgggagccggcggctgctg
ctgctcgccgccccctcggtcaccaaaaccgttgagcgtggcctcgacacccgcacccgg
ctgctcctggggaacaacccggacggctcgctgtcggcgctgctggaggactgcgcgcag
gccgcggtccagatcctcgtgcccgatccggtgtggacgaagaaggagttcgcggcgaca
cgccaccggctgaccgccggcctggcacagacgaccgccgacatcgtccgtcgggtacag
aaggtgctcgccgcactgcacgaggtcgagctggcggtgccgaaacagcccagcccggcg
caggccgacgcgatcgccgacatcagggcgcagctgtcgcggctggtgccaacgggtttc
gtcaccgccaccggggcggccaagctcggtgacctgacccgctatctgaccgcgatcgac
cgccgcctcgagcggctgccgcacgcgctgggcgccgaccgggagcgcatggatcgcgtc
gccgcggtgcaggacgcatacgacgacctgcgcgccgcgctctcacctgcccgcgccgcc
gcgccggaggtcgtcgacatcgcctggatgatcgaggagttacgggtgagcctgtgggcc
cagcaactgggcaccgcgcggccgatcagcgagcagcggatctaccgggcgctcaacgct
gccgagacgggtcgatga
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