Mycobacterium spongiae: F6B93_04140
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Entry
F6B93_04140 CDS
T07689
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mspg
Mycobacterium spongiae
Pathway
mspg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mspg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
F6B93_04140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mspg03021
]
F6B93_04140
03400 DNA repair and recombination proteins [BR:
mspg03400
]
F6B93_04140
Enzymes [BR:
mspg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
F6B93_04140
Transcription machinery [BR:
mspg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
F6B93_04140
DNA repair and recombination proteins [BR:
mspg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
F6B93_04140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QUR66383
UniProt:
A0A975JXB9
LinkDB
All DBs
Position
1046888..1050838
Genome browser
AA seq
1316 aa
AA seq
DB search
MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVDDEMRHNELSTLEAEMVVERKAVEDQRDAELEARAQKLEAD
LAELEAEGAKADAKRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL
YRELVDRYGEYFTGAMGAESIQKLMENFDIEAEADSLRETIRSGKGQKKLRALKRLKVVA
AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVDGDTGEYQ
PATDDSPQSGVYFSPAEAIMAADRGVLSVRAKIKVRLSALRPPAEIEAELFGATGWQPGD
AWMAETTLGRVMFNELLPQGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG
FYWATRSGVTVSMADVLVPPRKKEILDHYEDRADKVEKQFQRGALNHDERNEALVEIWKE
ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF
REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRELDCQTERGIVVE
LAERQPDGSLIRDPYIETSAYARTLGTDAVDGDGNVVVERGRDLGDPEIDALLAAGITQV
KVRSVLTCTTSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITVVPDDGGEEVVYDKL
SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE
VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRGVAEGGEP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA
GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgaactccgtatcggtctggctaccgcggaggacatc
aggcaatggtcttacggcgaggtcaagaagccagagacgatcaactaccgcacgctgaag
ccggagaaagacggccttttctgcgagaagatcttcggaccgactcgtgactgggagtgc
tactgcggcaagtacaagcgggtgcgcttcaagggcatcatttgtgagcgctgcggcgtc
gaggtgacccgcgccaaggtgcgtcgtgagcggatgggccacatcgagctggccgcaccg
gtgacgcacatctggtacttcaagggtgtgccgagccggcttggctacttgctggacttg
gccccgaaggaccttgagaagatcatctacttcgcggcgtatgtgatcacgtcggtcgac
gacgagatgcggcacaacgagctgtcgacgcttgaagccgaaatggtggtggaacgcaag
gccgttgaggatcagcgcgacgccgaattggaggcccgggcgcagaagctggaggccgac
ctggccgagctggaggccgagggggccaaggccgacgccaagcgtaaggttcgcgacggc
ggtgagcgtgagatgcgccagatccgcgaccgcgcgcagcgtgagttggaccggctggag
gacatctggagtaccttcaccaagttggctcccaagcagctgatcgtcgatgagaacctc
taccgagagcttgtcgaccggtatggcgagtacttcaccggcgctatgggcgcggagtcg
atccagaagctgatggagaacttcgacatcgaggccgaggcggattcgctgcgggagacc
attcgaagtggcaagggacagaagaagcttcgcgcgctgaagcggctgaaggtggtcgcg
gccttccagcagtcgggcaactcgcccatgggtatggtgctcgacgcggtgccggtcatc
ccgccggagctacgcccgatggtccagctcgacggtggccgcttcgcgacgagcgacctc
aacgacctgtaccgccgagtgatcaaccgcaacaaccggctcaagagactcattgatctg
ggtgcgccggagatcatcgtcaacaacgagaagcggatgctgcaggagtccgtggacgcg
ctgttcgacaacggccgtcgtggccggccggtcaccgggcccggcaaccgtccgctgaag
tcgttgtcggacttgctcaagggcaagcagggccggttccgccagaatctgctcggcaag
agagtggactactcgggtaggtcggttattgtggtcggcccgcagctcaagctgcaccag
tgtggtctgcccaaactgatggcgctggagctgttcaagccgttcgtgatgaagcggctc
gtcgacctcaatcacgcgcagaacatcaagagcgccaaacgaatggtggagcgccagcgt
ccacaggtgtgggacgtgctggaagaggtcatcgccgagcacccggtgctgctgaaccgc
gcccccaccctgcaccggctgggtatccaggcgttcgagccaatgctggtggaaggcaag
gccattcagctgcacccgttggtgtgtgaggcgttcaacgccgacttcgacggtgaccag
atggcggtgcacctgccactgtccgccgaggcgcaggccgaagcccggattctgatgctg
tcgtccaacaacatcctctcgccggcgtctggccgccccctggccatgccgcgactggac
atggtgaccgggctctactatctgaccaccgaggttgacggcgacaccggcgaataccag
ccggccaccgacgacagcccgcagtcgggcgtgtacttctcgcctgcggaggcgatcatg
gctgccgaccgcggtgtgctctcggtgcgggccaagatcaaggtgcggttgtcggcgctg
cgtccacccgccgagatcgaggccgagctgttcggcgccaccggctggcagcccggtgac
gcgtggatggccgaaaccacgctgggccgggtgatgttcaacgagctgctgccgcagggc
tatccgttcgtgaacaagcagatgcacaagaaggtgcaagctgcgatcatcaacgacctg
gccgagcgctacccgatgatcgtggtcgcgcagaccgtcgacaagctcaaggacgcgggc
ttttattgggcgacgcgaagcggtgtcaccgtctcgatggccgatgtgttggtgccaccg
cggaagaaagagattctcgaccactacgaagaccgggcggacaaggtcgaaaagcagttc
cagcgtggcgctttgaaccacgatgagcgcaacgaggcgctcgtggagatttggaaggaa
gccaccgacgaggttggccaagcgttgcgggagcactaccccgacgacaacccgatcatc
acgatcgtggactccggtgccacgggtaacttcactcagacacggacgcttgctggcatg
aagggtctggtgaccaacccgaagggtgagttcatcccccggcccgtcaagtcgtcgttc
cgcgagggcctgaccgtgttggagtacttcatcaacacccacggcgctcgaaaaggcctg
gcggacaccgcgttgcggaccgctgactctggatacctgacccggcgtctggtcgacgtg
tcacaggatgtgatcgtccgcgagctggactgccagaccgagcgtggcatcgtcgtcgag
ctggccgagcgtcagcctgacggcagcttgattcgcgacccgtacatcgagacctcggcg
tacgcgcgcacgctgggcaccgacgcggtcgacggggacggcaacgtggtcgtcgagcgc
ggtcgggacttgggcgatccggagatcgatgcgctgctggccgcgggtatcacgcaggtg
aaggtgcgttcggtgctgacctgcaccacgagcaccggcgtgtgcgcgacctgctatgga
cgttccatggccaccggcaagctggtcgacatcggtgaagcggtcggcatcgtggcggcc
cagtccatcggtgagcccggcacgcagctgaccatgcgtaccttccaccaaggcggtgtc
ggcgaggacatcaccggcggtctgccacgagtgcaggagctcttcgaggcccgggtgccg
cgcggcaaggcgccgatcgccgatgtcaccggccgggtccggctcgaggatggcgagcgc
ttctacaagatcaccgtcgtgcccgatgacgggggcgaggaagtggtctacgacaagctc
tccaagcggcagcggctgcgagtgttcaagcacgaggatggttccgagcgggtgctctcc
gacggtgaccacgtcgaggtgggccagcagctgatggaaggctccgccgacccgcacgag
gtgctgcgcgtgcagggcccccgcgaggtgcagatccacctcgttcgcgaggtccaggag
gtctaccgcgcgcagggtgtgtcgatccacgacaagcacatcgaggtgatcgtgcgccag
atgctgcgccgggtcaccatcattgactcgggctcgacggagttcctgcccggctcgctg
attgatcgtgccgagttcgaggcagagaaccgtcgcggggtggctgaaggcggcgagccc
gccgccggccgtccagtgctgatgggcatcacgaaggcgtcgctggctaccgactcgtgg
ctgtctgcggcgtcgttccaggagaccactcgggtgctcaccgatgcggcgatcaactgc
cgcagcgacaagctgaacggcctgaaggagaacgtgatcatcggtaagctgatccctgct
gggaccggcatcaaccgttaccgcaacatcgctgtgcagcccaccgaagaggcgcgcgca
gcggcgtacacgatcccgtcctacgaggaccagtactacagcccggacttcggtcaggcc
accggtgccgccgtcccgctggacgactacggctactcggattatcggtag
DBGET
integrated database retrieval system
