Microbulbifer spongiae: M8T91_15315
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Entry
M8T91_15315 CDS
T10475
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mspn Microbulbifer spongiae
Pathway
mspn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mspn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M8T91_15315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mspn03019
]
M8T91_15315
Enzymes [BR:
mspn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M8T91_15315
Messenger RNA biogenesis [BR:
mspn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M8T91_15315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
DUF8086
CMS1
HI1480
AAA_22
UvrD-helicase
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WKD49253
UniProt:
A0ABY9E8C9
LinkDB
All DBs
Position
complement(3753395..3754705)
Genome browser
AA seq
436 aa
AA seq
DB search
MLFENLGLTRDIARAVAEQGYRKPTPIQAQAIPAVMQGGDVMAAAQTGTGKTAGFTLPLL
HRLSAGQRACKGQVRVLVLTPTRELAAQVYENVQSYSKYLPMRHTVVFGGVKINPQISRL
RGGTDMLVATPGRLLDLHSQGAIHFDQLEALVLDEADRMLDMGFIHDIKRILKLLPRERQ
TLLFSATFSAEIRQLAKGLVNNPLEIDVSPRNSTTATVRQTLHPVDKARKTKLLSHLIRE
HHWHQALVFSRTKHGANRLVKQLEADNIRAVAIHGNKSQNARTRALAEFKAGKVQILVAT
DIAARGIDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGAHGQAVSLVSADEFKQLRDIER
LIGKAVPREEVEGFEPDHQVPASGSPRRSDGQRQRSERQKRAGGARGKGRHSGDRTSRSR
AGRRGNREGTPIHSGY
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttgaaaatctgggtctgacccgggatattgcccgcgccgttgcggagcaggga
taccgcaagcctacaccgatccaggcccaggctatcccggcggtgatgcagggcggggat
gtgatggcggcggcccagacaggcaccggaaaaacggcaggttttacactgccgttgctg
caccgcctgagcgcgggtcagcgcgcctgcaaaggccaggttcgcgttctggtactgaca
cccacacgggagttggccgcacaggtatatgagaatgtgcaaagctacagcaaatacctg
ccaatgcgccacacggtggtgtttggtggggtcaagatcaatccacagatctcgcgattg
cgtggcggcaccgatatgctggtggcgacaccggggcgtttgctggatctgcacagccag
ggcgctatccacttcgaccagttggaggccctggtactggatgaagccgaccgtatgctg
gatatgggctttatccacgatattaaacggatattgaaactactgccccgcgagcgccaa
accctgctgttttccgcaactttttccgcagaaatccgccagttagccaaagggctggtc
aacaatcccctggagatcgatgtcagcccccgtaactccaccactgcaaccgtacgccag
actcttcacccggtggacaaggcgcgaaaaacaaaactgttgagtcatctgattcgcgag
catcactggcaccaggccctggtgttcagccgcaccaaacacggtgccaatcgcctggta
aaacagctggaggcagataatatccgtgctgtggcgatccacggcaacaagagtcagaat
gcccgtacccgcgcgctggcggaatttaaggcaggcaaggtacagatcctggttgccacg
gatattgctgcgcgagggatcgatattgaccaactgccccaggtggtgaacttcgacctg
cccaatgtgccggaagactacgtacaccggattggtcgcacgggacgtgccggtgcccac
gggcaggcagtgtccctggtgagcgccgatgagttcaaacagttgcgggatatcgagcgc
ctgattggtaaagcagtgccacgggaagaggtcgagggtttcgagcccgaccatcaggtg
ccggcctccggcagtccgcggcgcagtgatgggcaaagacagcgctctgaacgccagaag
cgcgcagggggtgcgcgcgggaaaggccgtcacagcggtgatcgcacgagcaggagtcgc
gccgggcggcgcgggaacagggagggtactcccatccattctggttattag
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