Mycetocola spongiae: KXZ72_02185
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Entry
KXZ72_02185 CDS
T08087
Name
(GenBank) HRDC domain-containing protein
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
mspo
Mycetocola spongiae
Brite
KEGG Orthology (KO) [BR:
mspo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mspo03016
]
KXZ72_02185
Enzymes [BR:
mspo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
KXZ72_02185
Transfer RNA biogenesis [BR:
mspo03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
KXZ72_02185
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
UCR89528
LinkDB
All DBs
Position
complement(455651..456847)
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AA seq
398 aa
AA seq
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MADRHVITTEKEYRASIDAIIGGVGPIAVDAERASGYRYSQRAYLIQVFRREAGMFLFDP
IEIGPMHDLGAAIASEEWILHAASQDLACLREVGMDPLRIFDTELAARLLGLPRVGLGAV
VEQFLGIHLAKEHSAADWSTRPLPQSWLEYAALDVELLVDLRDEVAALLDSEEKTEIARQ
EFDAELHRAPAGPKVDPWRKLAGTPSGRNRQVLAVARELWTARDTLARKRDIAPGRLVPD
ASLQAAIKANPRTRSQLASLRAFTGRASRSELNTWWAAIERGQAETELPPLRLRTDSLPP
IRAWIDKNPEADHRLKVVRPRMIALAEELKMPVENLLTPETLRRLAWNPPAEPGAEGIAE
ALAEYGARPWQIKAIAQVISQAFVEAPQIEIEDSAAAS
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
gtggctgatcgccacgtcatcacgaccgagaaggaataccgggcgtcgatcgacgcgatc
atcggcggagtgggccccatcgcggtggatgccgagcgcgcctcgggctatcgctattcg
cagcgcgcctacctgatccaggtattccgtcgcgaggccggcatgttcctctttgatccg
atcgagatcggcccgatgcacgacctcggtgccgcgatcgcctccgaggagtggatcctg
cacgccgccagccaggacctcgcgtgcctgcgcgaggtgggcatggaccccctccgaatc
tttgataccgagctggccgcgcgcctgctgggcctgccgcgcgtgggtctgggcgccgtg
gttgagcagttcctcggcattcacctggccaaggaacactccgcggccgactggtccacg
cgccccctcccccagtcctggctggaatatgccgccctggacgtggagctgttggtggat
ctgcgcgatgaggtggccgccctcctcgacagcgaggagaagaccgagatcgcccggcag
gaatttgatgccgagctgcaccgcgcccccgccggccccaaggtggacccgtggcgcaag
ctggccggaacaccctccgggcgcaaccggcaggttttggccgtggcccgcgagctgtgg
accgcgcgcgataccctcgcccgcaagcgggatatcgccccgggcaggctggttcccgat
gcctcgctccaggccgccattaaggccaatccgcgtacccgctcccagctggcctcgctg
cgcgccttcacgggccgcgcgagccgctccgagctgaatacctggtgggccgcgatcgag
cgcggacaggccgagaccgagctgcctcccctgcgcctgcgcaccgattccctgcctccc
atccgcgcctggatcgataaaaaccccgaggccgatcaccggctgaaggtggtgcgcccg
cgcatgatcgccctcgccgaggagctgaagatgcccgtggaaaacctgctcacgccggag
accctgcgccgtctcgcctggaatcccccggccgagcccggggccgagggcatcgccgag
gccctcgccgaatacggcgcgcggccgtggcagattaaagctattgcacaggtaatctct
caggcctttgtagaagcaccccaaatcgagatcgaggacagcgccgcggcttcgtag
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