Mycetocola spongiae: KXZ72_04170
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Entry
KXZ72_04170 CDS
T08087
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mspo
Mycetocola spongiae
Pathway
mspo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mspo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KXZ72_04170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mspo03019
]
KXZ72_04170
03009 Ribosome biogenesis [BR:
mspo03009
]
KXZ72_04170
Enzymes [BR:
mspo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KXZ72_04170
Messenger RNA biogenesis [BR:
mspo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KXZ72_04170
Ribosome biogenesis [BR:
mspo03009
]
Prokaryotic type
rRNA helicases
KXZ72_04170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
UvrA_inter
adh_short
HTH_CLF_N
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UCR89872
LinkDB
All DBs
Position
892947..894776
Genome browser
AA seq
609 aa
AA seq
DB search
MTSPDNTPHGEADTARAAQTFTELGLDDAVLKALKDVGYETPSAIQAATIPPLLAGRDVV
GLAQTGTGKTAAFALPILSRLDATQKTPQALVLAPTRELALQVCEAFERYAAHLKGVRVL
PVYGGQGYGVQLSALRRGVQVVVGTPGRIMDHLNKGTLDLSELKYLVLDEADEMLKMGFA
EDVETILADTPDDKQVALFSATMPPQIRRISKKYLNDPEEITVKNKTTTSVNTTQRYLVV
GYPQKVDALTRILEVENFEGMIIFTRTKNETETLAEKLRARGYSAAAINGDVAQAQRERT
VNQLKSGKLDILVATDVAARGLDVERISHVVNFDIPIDTESYVHRIGRTGRAGRSGVAIS
FVTPRERRLLTAIERATRQPLEQMQLPSVDNVNATRLTRFDDAITEALGQTSRIERFREI
IGHYVEHHDVPEADVAAALAVVAQGETPLLLSAEDERAQQRRDRDERDRERTARTGERRD
DRGPRKFDRDDRGARSERPERRPRSSERPMSSYRIAVGKRQKVEPRQIVGALANEGGLSR
EDFGAIQIRPDFSLVELPADMPGDVLGRLENTRIGGKLIEIRPDRGAPARRSFDDDRGDR
RPPRRSYDR
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgacatcccctgacaacacgccgcacggcgaggcagacactgcccgcgcagcacagact
ttcaccgagcttggcctcgatgacgccgtactgaaggcactcaaggacgtcgggtacgag
accccctcggccatccaggccgccaccattcctccgcttcttgccggtcgtgacgttgtg
ggcctggcccagaccggaaccggaaagaccgcagccttcgcgctgccgattctctcgcgc
ctcgatgccacccagaagaccccgcaggccctcgtgcttgctcccacccgcgaactggcc
cttcaggtctgcgaggcgtttgaacgctatgcagcccacctgaagggtgtgcgcgtgctc
cccgtttatggcggacagggctacggcgttcagctctccgcgctgcgccgcggcgtccag
gttgtggtgggtacccccggccgcatcatggaccacctcaataagggcacgctggacctg
tccgagctgaagtacctggtgctggacgaggccgatgagatgctcaagatgggcttcgcg
gaggacgtcgagaccatcctggccgataccccggacgataagcaggtggccctgttctca
gccacgatgccgccccagattcgccgcatctcgaagaagtacctgaacgatcccgaagag
atcacggtcaaaaataagaccaccacctcggtcaacaccacgcagcgctatctggtggtg
ggctacccgcagaaggtggacgccctgacccggatcctcgaggtggaaaacttcgagggc
atgatcatcttcacgcgcaccaaaaacgagaccgagaccctcgccgagaagctgcgtgcg
cgcggctattccgcggcggccatcaacggtgacgtggcccaggcccagcgtgagcgcacc
gtgaaccagctcaaatcgggcaagcttgatatcctcgtggccaccgatgtggcggcgcgt
ggtctcgacgtggagcgcatcagccacgtggtgaacttcgatatcccgatcgacaccgag
tcctatgtgcaccgcatcggtcgcacgggtcgcgccggccgttccggtgtggccatctcc
tttgtcacgccgcgcgagcgtcgcctgctcaccgcgattgagcgcgccacgcgccagccg
ctcgagcagatgcagctgcccagcgtggataacgtcaacgccacgcgcctcacccgcttt
gatgacgccatcaccgaggcgctgggtcagaccagccggatcgagcgtttccgcgagatc
atcggccactatgtggagcaccacgacgtacccgaggccgatgtggccgcggccctcgcc
gtggtggcccagggtgagaccccgctgctgctctcggccgaggacgagcgcgcccagcag
cgccgcgatcgcgacgagcgcgaccgcgagcgcacggcccgcacgggtgagcgtcgcgat
gaccgcggcccgcgtaaatttgatcgcgatgaccgcggggcccgcagcgagcgtcccgag
cgtcgcccgcgttccagcgagcgtcccatgtcctcctatcgcatcgcggtgggcaagcgc
cagaaggttgagccgcgccagatcgtgggcgccctcgccaatgagggtggcctgagccgc
gaggacttcggcgcgatccagattcgtcccgatttctccctcgtggagctgccggccgat
atgcccggtgatgtgctgggccgcctggagaatacccgcatcggtggcaagctcatcgag
atccgccccgaccgcggggccccggcccgccgctcgtttgacgacgaccgcggcgaccgt
cgcccgccgcgtcgcagctacgaccgctag
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