Mycetocola spongiae: KXZ72_05010
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Entry
KXZ72_05010 CDS
T08087
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mspo
Mycetocola spongiae
Pathway
mspo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mspo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KXZ72_05010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mspo03019
]
KXZ72_05010
Messenger RNA biogenesis [BR:
mspo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KXZ72_05010
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
UCR90028
LinkDB
All DBs
Position
complement(1091153..1092829)
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AA seq
558 aa
AA seq
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MPVTAYMPPKLKKGTLRVTPIGGLGEIGRNMTTFEIDGKILIVDCGVLFPEEHQPGVDLI
LPDFGPIKDRLQDIVGVVLTHGHEDHIGAVPYLLRLRQDIPLIGSGLTLALVEAKLKEHR
IKPYTHTVKEGDTEKLGPFDLEFIAVNHSIPDALAVFIRTEAGTALVTGDFKMDQLPLDG
RITDLRAFARVGEEGVDLFLPDSTNAEVPGFTTPERDIGPVLSSVMAKTKGQVIVASFSS
HVHRVQQVLDAAYENGRRVALLGRSMVRNMTIAAELGYLHVPEGVLVDFKKTKGIPDNKI
VFMSTGSQGEPMAVLSRMVNQDHQVEPREGDTVILASSLIPGNENAVYRIIDGLTKLGAN
VVHKGNAKVHVSGHASAGELLYCYNILKPKNVLPVHGEHRHLFANGKLANQTGVPEKNTI
LGQDGIVVDLRDGVAREVGQLDLKFVYVDGKTVGEITEDDLRDRRVLGEEGFISILVAID
GKTGRIISGPQIQAKGFAEDVRVFDKVKPKIVAAINEAADNGVRDTHALNQIVRRTMGRW
VATSLRRRPMIVPMVVAA
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtcaccgcctatatgccgccgaaactgaaaaagggaaccctgcgggttaccccg
atcggcggactcggtgaaattggtcgcaatatgacgaccttcgaaatcgacggcaagatt
ctgatcgtggactgtggtgtgctcttccccgaggagcaccagcccggtgttgatctgatc
ctgcccgattttggaccgattaaggaccgcctgcaggacatcgtgggcgtggttttgacc
cacggccacgaggaccacatcggcgccgtcccctacctgctgcgcctgcgccaggatatt
ccgctgatcggctccggcctgaccctcgcactcgtggaggccaagctcaaggaacaccgg
attaagccctatacccacacggtgaaggagggggataccgagaagcttggtccgtttgac
ctcgaattcatcgccgtgaaccactcgatcccggatgccctcgcggtattcatccgcacc
gaggccggtacggccctggtcacgggtgacttcaagatggatcagctgcccctggacggt
cggatcaccgacctgcgcgcgtttgcccgcgtcggcgaggagggcgtggacctgttcctg
cccgattccaccaacgccgaggttcccgggttcaccacgcccgagcgcgatatcggaccg
gttctgtcctccgtgatggccaagaccaagggtcaggtcatcgtggcgagcttctcgagc
cacgttcaccgcgtgcagcaggtgctggatgccgcctacgagaacggccgccgcgtggcc
ctgctgggtcgttcgatggtgcgcaatatgaccatcgccgccgagctcggctatctgcac
gtccccgagggtgtgctggtggacttcaagaagaccaagggcattcccgataataagatc
gtcttcatgtccacgggttcgcagggcgagccgatggccgtgctgagccggatggtcaac
caggatcaccaggtggagccccgcgagggcgataccgtgatcctcgcgtcgagcctgatc
ccgggtaacgagaacgccgtgtatcgcatcatcgacgggctcaccaagctcggcgccaat
gtggtgcataagggcaacgccaaggtgcacgtctccggacacgcctccgccggcgagctg
ctctactgctataacatcctcaagcccaagaacgtgctgcccgtgcacggcgagcaccgc
cacctctttgccaatggcaagctcgccaaccagaccggtgttcccgagaagaacaccatc
ctcggtcaggacggcatcgttgtggatctgcgcgatggtgtggcccgcgaggtgggtcag
ctcgatctgaagtttgtctacgtggacggcaagaccgtcggcgagatcaccgaggacgac
ctgcgcgaccgccgcgtgctgggcgaggagggtttcatctcgatcctcgtggccatcgac
ggcaagaccggccggatcatctccggtccgcagatccaggccaagggctttgccgaggac
gtccgcgtctttgataaggtcaagccgaagatcgtcgccgcgattaacgaggccgccgat
aacggcgtacgcgacacccacgcactgaaccagatcgtgcgccgcacgatgggtcgctgg
gtggccacgtcgctgcgtcgccgcccgatgatcgttccgatggtggttgccgcataa
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