Mycetocola spongiae: KXZ72_11360
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Entry
KXZ72_11360 CDS
T08087
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mspo
Mycetocola spongiae
Pathway
mspo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mspo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KXZ72_11360 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mspo03021
]
KXZ72_11360 (rpoC)
03400 DNA repair and recombination proteins [BR:
mspo03400
]
KXZ72_11360 (rpoC)
Enzymes [BR:
mspo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KXZ72_11360 (rpoC)
Transcription machinery [BR:
mspo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KXZ72_11360 (rpoC)
DNA repair and recombination proteins [BR:
mspo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KXZ72_11360 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
YlqD
DUF1690
Motif
Other DBs
NCBI-ProteinID:
UCR88549
LinkDB
All DBs
Position
2491474..2495352
Genome browser
AA seq
1292 aa
AA seq
DB search
MLDVTTFDELRIGLATADDIRRWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
SCGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVISVDEEGRHADLPGLENELRLELKTLGDQRDARIADRLKRLEDD
LAALEAEGAKADQKRRAKDAAEKEMTQTRKSFDEQIAQLERVWEDFRTLKVGDLKPEDSV
FHELQDRYGVYFEAFMGAEAIKKRLLSFDLPAESELLHLQISEGKGQKKIRAIKRLKVVN
SFIMTGNSPAAMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLGRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLSHAQNIKAAKRMVERAR
PEVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTLPSQDMIIGLHHLTTVTEGAIGEGR
AFSTVSEAIMAKDQGTLDLNAMVKIRLNNVHFYPEAKPEGYVDGPIIVDTTLGEALFNEL
LPADYPYVQDVADKGRLSTLVNDLAERYPKNVVAATLDNIKDAGFYWATRSGITVALSDV
LTPPNKREIVAGYEKKAAKVQSQFDKGLTTDAERRAELIEIWTEATDKVAEAMRANFPKD
NTINRMVTSGARGNWLQIRNIAGMRGLVNNPKGEIIPRPIISSYREGLSVAEYFIATHGA
RKGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTGKGLELPIAAVNAEGVLTKDPNV
ENSVFARSLAAAAVAENGTVIAEAGADVGDVLIDELVSAGVNKIKVRSVLTCESAVGVCA
ACYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASADDITQGLPRVQEL
FEARTPKGATPIAEAAGRITIDETDKSRKVILTPDNGDEPVIYPVLKRAVLLVEDGQHVE
LGAPLHIGAVDPKEVLRVQGVREVQKHLVGGVQGVYRSQGVPIHDKHIEVIVRQMLRKVT
VVDHADTDLLPGELVDRSRYNELNRAALAEGKRTASARQEVMGITKASLATESWLSAASF
QETTRVLTQAAMEGKSDPLVGLKENVIIGKLIPAGTGLARYRNVSVDATEEAKAERYPNR
IFASDGVFDENDLSFVDFDSFTGDDFTPGTYN
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgatgtaacaacttttgacgagcttcgcattggcctggccaccgccgacgacatc
cgtcgctggtcgcacggtgaggttaagaagcccgaaaccatcaactaccgcacgctgaag
cccgagaaggacggcctgttcggcgagcagatcttcggaccctcgcgggactgggagtgt
tcctgtggcaagtacaagcgtgtccgctttaagggcatcgtttgtgagcgctgtggcgta
gaggtcaccaagtccagtgttcgtcgcgagcgcatgggccacattgagctcgccgcgccc
gtcacgcacatctggtacttcaagggtgtccccagccgcctcggctacctcctcgatatg
gcaccgaaggacctcgaaaaggtcatctacttcgccgcctatatggtgatttccgtggac
gaagagggccgtcacgccgatcttccgggcctcgagaacgagctgcggcttgagctcaag
accctgggtgaccagcgcgatgcccgcatcgccgaccgcctgaagcgcctcgaggacgac
ctcgcggcccttgaggccgagggtgccaaggccgaccagaagcgtcgcgccaaggatgcc
gccgagaaggaaatgacgcagacgcgtaagtccttcgacgagcagatcgcccagctggag
cgcgtgtgggaagacttccgcaccctcaaggtgggcgacctgaagcccgaggactccgtg
ttccacgagctccaggaccgctacggcgtgtacttcgaggcattcatgggtgccgaggcc
atcaagaagcgcctgctctccttcgatctccccgccgagtcggagctcctgcacctgcag
atctccgagggcaagggtcagaagaagatccgcgcaattaagcgcctcaaggtggttaac
tccttcatcatgaccggcaactcgccggccgcgatggttctggatgttgttccggtgatt
ccgccggagctgcgcccgatggttcagctggacggtggccgctttgcgacctccgacctc
aacgacctctaccgtcgcgtgatcaaccgcaataaccgtctgggccgtctgcttgacctc
ggtgcccccgagatcatcgtgaataacgagaagcgcatgctccaggaggccgtggacgca
ctgttcgataacggtcgtcgtggtcgccccgtcaccggtaccggtaaccgcgccctgaag
tccctgagcgacatgctcaagggtaagcagggtcgattccgtcagaacctgctgggtaag
cgcgtggactactcgggccgttcggtcatcgtggtgggcccgcagctgaagctgcaccag
tgtggtctgcccaagcagatggctctggagctcttcaagccgttcgtgatcaagcgcctg
atcgacctgagccacgcccagaacatcaaggccgcaaagcgcatggttgagcgcgcccgt
cccgaggtctgggacgtgctcgaggagatcatccgtgagcgtccggttctgctgaaccgt
gcacctacgctgcaccgcctgggtatccaggccttcgagcctcagctcgttgagggtaag
gccattcagctgcacccgctggtttgtgccgcgtttaacgccgacttcgatggcgaccag
atggcagttcacctgccgctgtcggtcgaggcccaggccgaggctcgcatcctgatgctc
gcctcgaataacatcctgaagccctcggacggccgcccggtgaccctgccctcgcaggat
atgatcatcggtctgcaccacctcaccaccgtcaccgagggtgccatcggagagggccgc
gccttctccacggtttccgaggcgatcatggccaaggaccagggcaccctggacctcaac
gccatggtgaagatccgtctgaataacgtccacttctatcccgaggccaagcccgagggt
tatgtggacggcccgatcatcgtggacaccacgctgggtgaggcactcttcaacgagctg
ctgcccgcggactacccctatgtgcaggatgttgccgataagggtcgcctgtcgaccctc
gtcaacgacctcgccgagcggtacccgaaaaacgtggttgccgcgacgctggacaacatc
aaggacgccggtttctactgggccacgcgttcgggaatcaccgttgccctgtcggacgtt
ctcaccccgccgaataagcgcgagatcgtggccggctacgagaagaaggccgccaaggtt
cagagccagtttgataagggtctgaccaccgacgccgagcgtcgcgccgagctcatcgag
atctggaccgaggccaccgataaggtagccgaggccatgcgcgcgaacttcccgaaggac
aacaccatcaaccgcatggtgacctcgggagcccgtggtaactggctgcagatccgcaat
attgcgggtatgcgaggcctggtgaacaacccgaagggtgagatcatccctcgcccgatc
atctcgtcctaccgtgagggtctgtcggttgcggagtacttcatcgcaacccacggtgcc
cgtaagggtctggccgataccgcactgcgtaccgccgactcgggttatctgacccgtcgt
ctggtggatgtctcgcaggacgtcatcatccgtgaggacgactgtggtaccggtaagggc
ctggagctgccgatcgcggctgtgaacgccgagggtgtcctgaccaaggaccccaacgtg
gagaactccgtattcgctcgctcgctcgcggcagccgccgtggccgagaacggcacggtt
attgccgaggccggcgcggatgtcggagacgtcctgatcgacgagctggtttcggccggt
gtgaataagatcaaggtgcgctccgtactgacgtgtgagtccgccgtgggtgtatgtgct
gcctgctatggtcgctcgctcgccaccggaaagctcgtggacatcggtgaggccgtcggt
attattgccgctcagtccatcggtgagcccggtacccagctgaccatgcgtaccttccac
acgggtggttcggcctcggccgatgacatcacccagggtctgccgcgcgtgcaggagctg
ttcgaggcgcgtacccccaagggggccaccccgatcgccgaggccgccggtcgcatcacc
atcgacgagaccgataagtctcgtaaggtgatcctgaccccggataacggcgacgagccg
gtcatctaccccgtgctgaagcgtgcggttctcctcgttgaggacggccagcacgtggag
cttggtgccccgctgcacatcggtgccgtggaccccaaggaggttctgcgcgtgcagggt
gtccgcgaggttcagaagcacctcgtgggtggcgtgcagggcgtataccgctcgcagggt
gtgccgattcacgataagcacatcgaggtcatcgtccgtcagatgctccgcaaggtaacc
gtggttgaccacgccgataccgatctgctgccgggtgagctggttgaccgttcgcggtat
aacgagctcaaccgtgccgccctcgccgagggcaagcgcacagcttcggcccgtcaggaa
gtcatgggtatcaccaaggcctcgctggcgaccgagtcgtggctgtcggccgcgtccttc
caggagaccacccgggttctgacccaggcggccatggagggcaagtccgacccgctggtg
ggcctcaaggagaacgtcatcatcggtaagctcatccccgccggaaccggacttgcgcgt
taccgcaacgtctcggtcgacgcgacggaggaggccaaggccgagcgctacccgaaccgg
atcttcgcatccgacggtgtattcgacgagaacgacctctcgtttgtggacttcgactcc
ttcaccggagacgatttcacccccggtacctataactag
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