Methylosinus sporium: MSP5_000553
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Entry
MSP5_000553 CDS
T11225
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
mspr Methylosinus sporium
Brite
KEGG Orthology (KO) [BR:
mspr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mspr03032
]
MSP5_000553 (topA)
03400 DNA repair and recombination proteins [BR:
mspr03400
]
MSP5_000553 (topA)
Enzymes [BR:
mspr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
MSP5_000553 (topA)
DNA replication proteins [BR:
mspr03032
]
Prokaryotic type
DNA Topoisomerases
MSP5_000553 (topA)
DNA repair and recombination proteins [BR:
mspr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
MSP5_000553 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
XWX53568
LinkDB
All DBs
Position
complement(556173..559088)
Genome browser
AA seq
971 aa
AA seq
DB search
MNVVIVESAAKAQTINKYLGRDFNVIACYGHVRDLPPKDGSVDPAEDFAMKWESDAKSAK
RISAIADAVKSADTVILATDPDREGEAISWHLLDILKKKKALGGKRVERVVFNAVTKDAI
RQAMAHPREIDQALVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR
ELEIEKFVTREYWSLVAHLKTKAGEPFTARLSGADGKKITRLDIGSGQEAEDFKKALESA
AFTIRSVEAKPVKRHPYAPFTTSTLQQEASRKLGLAPAQTMRIAQRLYEGVDIGGETAGL
ITYMRTDGVDMAPEAIASARNVIAKEYGDRFVPKIPRKYTVKAKNAQEAHEAIRPTDLSR
LPKHVAKHLEPEQAKLYELIWTRTIASQMESAELERTTVDIDALVGKRSLELRASGQVVR
FSGFLELYQEGRDDDQDEDGGRLPAMQPGEPATREKIEASQHFTEPPPRYTEATLVKRME
ELGIGRPSTYASTLAVLRERDYVRLDKKRLVPEDKGRIVTAFLESFFTRYVEFDFTAGLE
EKLDKVSNNEIDWKEVLRDFWADFSGAVDGTKELRTTQVLDSLNDLLGPHIFPAKPDGSD
PRACPACSAGQLSLKLGKYGAFIGCSNYPECRFTRTLSPPTGEAAEGARPGVKVLGQDPE
SGAEITLRGGRFGDYVQEGEATEEGEKPKRSSIPKSIKPDELTLEQAIRLLSLPREVAKH
PESGEPIVAGIGRFGPYVQHGKTYANIGRDDDILTIGGNRAIDLIVTKESGGGGSRFGRA
SDPGRTLGDHPQGGAISVKSGRFGPYVNWGKVNATLPKGTDTESLTVQQAVDLLAAKASG
APSGGGRVLGDHPQGGAITLRDGRYGPYVNLGKVNATLPKNMSPEDVTLEEAIRLIEEKG
GPVKAKKAPAKKAPAAKAKAPASKAPAKKAAAKKDIEESDEVPFEDSKPAKKAAAAKEPA
KKPTKKAASGK
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtcgtcatcgtcgaatcggccgccaaggcccagacgatcaacaaatatctcggc
cgcgatttcaatgtgatcgcctgctacggccatgtgcgcgacctgccgcccaaggacggc
tcggtcgatccggccgaagatttcgcgatgaaatgggagagcgacgcgaagtcggccaag
cgcatctcggcgatcgccgacgccgtgaagagcgccgacacggtcattctggcgaccgac
ccggatcgcgagggcgaggccatctcctggcatttgctcgacatattgaagaagaagaag
gcgctcggcggcaagcgcgtcgagcgcgtcgtcttcaacgccgtcaccaaggacgcgatc
cgccaagcgatggcgcatccgcgcgagatcgaccaagcgctggtcgacgcctatctcgcc
cgccgggcgctggattatctcgtcggcttcacgctctcgccagtgctgtggcggaaattg
ccgggcgcgcgctcggccggccgcgtgcaatcggtggcgctacgcctcgtctgcgaccgc
gagctggagatcgagaaattcgtcacgcgcgaatattggtcgctggtcgcccatctgaaa
accaaggccggcgagcctttcaccgcccgcctctcgggcgccgacggcaagaagatcacc
cgcctcgacatcggctctggccaggaggccgaggacttcaaaaaggcgctggagagcgcc
gccttcaccattcgatcggtggaggcgaagccggtcaagcggcacccttacgcgcctttc
accacctcgacgctgcagcaggaggcctcgcgcaagctcggactcgccccggcgcagacc
atgcgcatcgcgcagcgcctctatgagggcgtcgacataggcggcgagaccgccggcctc
atcacctatatgcgaaccgacggcgtcgatatggcgccggaggccatcgcctcggcgcgc
aatgtgatcgccaaggaatatggcgatcgcttcgtgccgaagattccgcgcaaatatacg
gtgaaggccaagaacgcccaggaggcgcatgaggcgatccggccgaccgacctctcgcgc
ctgcccaagcatgtcgccaagcatttggagccggagcaggccaagctctatgagctgatc
tggacccgcaccatcgccagccaaatggaatccgccgagctggagcgcaccacggtcgat
atcgacgccctcgtcggcaagcggagcctcgagctgcgcgcctctggccaggtggtgcgc
ttctcgggctttctcgagctctatcaggaaggccgcgacgacgatcaggacgaggatggc
ggccgcctgccggcgatgcagcccggcgagccggcgacgcgcgagaagatcgaggccagc
cagcatttcaccgagccgccgccacgctatacggaggccactctggtcaagcgcatggag
gagctcggcatcggccgtccctccacctacgcctcgactctggctgtgctgcgcgagcgc
gattatgtgcgtctcgacaagaagcgcctcgtccccgaggacaagggccgcatcgtgaca
gcctttctggagagcttcttcacccgctatgtggagttcgacttcaccgccggcctcgag
gagaagctcgacaaggtctccaacaatgagatcgactggaaagaggtgctgcgcgacttc
tgggccgatttctccggcgccgtcgacggcaccaaggagctgcgcaccactcaggtgctc
gacagcctcaatgatctgctggggccgcatattttcccggccaagcccgacggctccgat
ccgcgcgcctgcccggcctgcagcgccggccaattgtcgctgaagctcggcaaatacggc
gccttcatcggctgctccaactatcccgaatgccgcttcacccgcacgctctcgccgccc
accggcgaggccgccgagggcgcgcggccgggcgtgaaggtgctgggccaggacccggag
agcggcgccgagatcactctgcgcggcggccgcttcggcgattatgtgcaggagggcgaa
gcgaccgaggagggcgagaagcccaagcgctcctccatccccaagagcataaagcccgac
gaactgaccctcgagcaggcaatccggctgctgtcgctgccgcgcgaggtggccaagcat
cccgagagcggcgagccgatcgtcgccggcatcggccgcttcgggccttacgtccagcac
gggaagacctacgccaatatcggccgcgacgacgatattctgacgatcggcggcaatcgc
gccatcgatctcatcgtcaccaaggagagcggcggcggcggctcgcgcttcggccgcgcc
tccgaccccggccgcacgctcggcgaccatccgcagggcggcgcgatctcggtgaagagc
gggcgcttcggaccttatgtgaattggggcaaggtcaacgccactcttcccaagggaacc
gataccgagagcctgacggtgcagcaggcggtcgatcttttggccgccaaggcgagtggc
gcgccctcgggcggcggccgcgtgctcggcgaccatccgcaaggcggcgcgatcacgctg
cgcgacggccgctatgggccttatgtaaatctcggcaaggtcaacgccactctgccgaag
aatatgagcccggaagatgtgacgctcgaagaggcgatccgtctgatcgaggagaagggc
ggcccggtgaaggccaagaaggcgccggccaaaaaggcccccgccgccaaggccaaagcg
cccgcctccaaggctccggcgaaaaaagccgccgccaagaaggacatagaagagagcgac
gaggttccgttcgaggattcgaagccggcgaaaaaagcggccgccgccaaggagcccgcc
aagaagcccacgaagaaagcagcctcggggaagtga
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